Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2361

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2359 and Ac3H11_2360 are separated by 292 nucleotidesAc3H11_2360 and Ac3H11_2361 are separated by 207 nucleotidesAc3H11_2361 and Ac3H11_2362 are separated by 118 nucleotides Ac3H11_2359 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 616,153 to 617,319 _2359 Ac3H11_2360 - Mlr7906 protein, at 617,612 to 618,082 _2360 Ac3H11_2361 - hypothetical protein, at 618,290 to 618,625 _2361 Ac3H11_2362 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 618,744 to 619,628 _2362 Position (kb) 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 617.325 kb on + strandat 617.344 kb on - strandat 617.344 kb on - strandat 617.344 kb on - strandat 617.353 kb on + strandat 617.581 kb on + strandat 617.581 kb on + strandat 617.582 kb on - strandat 617.582 kb on - strandat 617.582 kb on - strandat 617.582 kb on - strandat 617.582 kb on - strandat 617.585 kb on + strandat 617.585 kb on + strandat 617.585 kb on + strandat 617.585 kb on + strandat 617.585 kb on + strandat 617.586 kb on - strandat 617.586 kb on - strandat 617.586 kb on - strandat 617.586 kb on - strandat 617.586 kb on - strandat 617.586 kb on - strandat 617.586 kb on - strandat 617.717 kb on + strand, within Ac3H11_2360at 617.717 kb on + strand, within Ac3H11_2360at 617.717 kb on + strand, within Ac3H11_2360at 617.718 kb on - strand, within Ac3H11_2360at 617.718 kb on - strand, within Ac3H11_2360at 617.718 kb on - strand, within Ac3H11_2360at 617.805 kb on + strand, within Ac3H11_2360at 617.805 kb on + strand, within Ac3H11_2360at 617.806 kb on - strand, within Ac3H11_2360at 617.806 kb on - strand, within Ac3H11_2360at 617.806 kb on - strand, within Ac3H11_2360at 617.858 kb on + strand, within Ac3H11_2360at 617.858 kb on + strand, within Ac3H11_2360at 617.859 kb on - strand, within Ac3H11_2360at 617.906 kb on + strand, within Ac3H11_2360at 617.906 kb on + strand, within Ac3H11_2360at 617.907 kb on - strand, within Ac3H11_2360at 617.930 kb on + strand, within Ac3H11_2360at 617.930 kb on + strand, within Ac3H11_2360at 617.931 kb on - strand, within Ac3H11_2360at 617.931 kb on - strand, within Ac3H11_2360at 617.931 kb on - strand, within Ac3H11_2360at 617.931 kb on - strand, within Ac3H11_2360at 618.083 kb on + strandat 618.083 kb on + strandat 618.084 kb on - strandat 618.084 kb on - strandat 618.104 kb on - strandat 618.104 kb on - strandat 618.194 kb on + strandat 618.194 kb on + strandat 618.232 kb on - strandat 618.232 kb on - strandat 618.237 kb on + strandat 618.237 kb on + strandat 618.237 kb on + strandat 618.238 kb on - strandat 618.238 kb on - strandat 618.238 kb on - strandat 618.238 kb on - strandat 618.238 kb on - strandat 618.238 kb on - strandat 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.344 kb on + strand, within Ac3H11_2361at 618.345 kb on - strand, within Ac3H11_2361at 618.357 kb on - strand, within Ac3H11_2361at 618.545 kb on + strand, within Ac3H11_2361at 618.545 kb on + strand, within Ac3H11_2361at 618.546 kb on - strand, within Ac3H11_2361at 618.690 kb on - strandat 619.040 kb on + strand, within Ac3H11_2362at 619.041 kb on - strand, within Ac3H11_2362at 619.041 kb on - strand, within Ac3H11_2362at 619.041 kb on - strand, within Ac3H11_2362at 619.395 kb on + strand, within Ac3H11_2362at 619.395 kb on + strand, within Ac3H11_2362at 619.395 kb on + strand, within Ac3H11_2362at 619.395 kb on + strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.396 kb on - strand, within Ac3H11_2362at 619.483 kb on + strand, within Ac3H11_2362at 619.484 kb on - strand, within Ac3H11_2362at 619.484 kb on - strand, within Ac3H11_2362at 619.555 kb on - strandat 619.555 kb on - strandat 619.555 kb on - strandat 619.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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617,325 + +1.4
617,344 - -0.9
617,344 - -2.4
617,344 - +0.0
617,353 + -0.2
617,581 + +1.4
617,581 + +0.7
617,582 - +0.6
617,582 - +2.3
617,582 - -0.1
617,582 - +1.9
617,582 - -1.6
617,585 + -1.6
617,585 + +0.4
617,585 + -2.7
617,585 + +1.0
617,585 + +0.1
617,586 - +0.3
617,586 - +2.4
617,586 - -1.2
617,586 - -0.2
617,586 - -0.0
617,586 - +1.0
617,586 - -0.3
617,717 + Ac3H11_2360 0.22 +1.7
617,717 + Ac3H11_2360 0.22 +0.0
617,717 + Ac3H11_2360 0.22 -1.2
617,718 - Ac3H11_2360 0.23 +0.6
617,718 - Ac3H11_2360 0.23 -1.3
617,718 - Ac3H11_2360 0.23 +0.6
617,805 + Ac3H11_2360 0.41 -2.2
617,805 + Ac3H11_2360 0.41 +3.4
617,806 - Ac3H11_2360 0.41 -2.4
617,806 - Ac3H11_2360 0.41 -1.6
617,806 - Ac3H11_2360 0.41 -2.2
617,858 + Ac3H11_2360 0.52 -1.2
617,858 + Ac3H11_2360 0.52 +0.2
617,859 - Ac3H11_2360 0.52 -0.9
617,906 + Ac3H11_2360 0.62 +0.7
617,906 + Ac3H11_2360 0.62 -1.2
617,907 - Ac3H11_2360 0.63 -2.5
617,930 + Ac3H11_2360 0.68 -0.7
617,930 + Ac3H11_2360 0.68 -0.6
617,931 - Ac3H11_2360 0.68 -0.4
617,931 - Ac3H11_2360 0.68 +0.1
617,931 - Ac3H11_2360 0.68 -1.9
617,931 - Ac3H11_2360 0.68 +1.2
618,083 + +0.2
618,083 + +1.1
618,084 - +1.4
618,084 - -0.5
618,104 - +0.1
618,104 - +1.7
618,194 + -0.8
618,194 + +1.4
618,232 - -2.3
618,232 - +1.1
618,237 + -0.7
618,237 + -0.3
618,237 + +0.6
618,238 - -3.2
618,238 - +0.2
618,238 - +0.1
618,238 - -0.4
618,238 - +0.9
618,238 - +0.4
618,344 + Ac3H11_2361 0.16 +0.3
618,344 + Ac3H11_2361 0.16 +0.1
618,344 + Ac3H11_2361 0.16 -1.1
618,344 + Ac3H11_2361 0.16 -0.4
618,344 + Ac3H11_2361 0.16 -1.4
618,344 + Ac3H11_2361 0.16 +0.3
618,344 + Ac3H11_2361 0.16 +0.2
618,344 + Ac3H11_2361 0.16 +0.0
618,344 + Ac3H11_2361 0.16 +0.8
618,345 - Ac3H11_2361 0.16 -1.1
618,357 - Ac3H11_2361 0.20 +0.4
618,545 + Ac3H11_2361 0.76 +0.7
618,545 + Ac3H11_2361 0.76 +1.6
618,546 - Ac3H11_2361 0.76 -0.9
618,690 - +4.4
619,040 + Ac3H11_2362 0.33 +0.6
619,041 - Ac3H11_2362 0.34 +1.1
619,041 - Ac3H11_2362 0.34 -1.5
619,041 - Ac3H11_2362 0.34 +1.0
619,395 + Ac3H11_2362 0.74 -1.9
619,395 + Ac3H11_2362 0.74 -0.4
619,395 + Ac3H11_2362 0.74 -0.1
619,395 + Ac3H11_2362 0.74 +0.7
619,396 - Ac3H11_2362 0.74 -0.2
619,396 - Ac3H11_2362 0.74 -2.2
619,396 - Ac3H11_2362 0.74 +2.9
619,396 - Ac3H11_2362 0.74 -2.4
619,396 - Ac3H11_2362 0.74 -1.0
619,396 - Ac3H11_2362 0.74 +0.1
619,396 - Ac3H11_2362 0.74 +0.4
619,396 - Ac3H11_2362 0.74 -1.0
619,483 + Ac3H11_2362 0.84 -3.3
619,484 - Ac3H11_2362 0.84 -1.3
619,484 - Ac3H11_2362 0.84 -3.1
619,555 - -1.0
619,555 - +1.1
619,555 - +1.0
619,605 - +1.3

Or see this region's nucleotide sequence