Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2271

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2270 and Ac3H11_2271 are separated by 21 nucleotidesAc3H11_2271 and Ac3H11_2272 are separated by 98 nucleotides Ac3H11_2270 - Pole remodelling regulatory diguanylate cyclase, at 504,603 to 505,772 _2270 Ac3H11_2271 - Response regulator, at 505,794 to 506,711 _2271 Ac3H11_2272 - Biotin synthase (EC 2.8.1.6), at 506,810 to 507,886 _2272 Position (kb) 505 506 507Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 504.810 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.930 kb on + strand, within Ac3H11_2270at 504.931 kb on - strand, within Ac3H11_2270at 504.931 kb on - strand, within Ac3H11_2270at 504.931 kb on - strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.161 kb on + strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.162 kb on - strand, within Ac3H11_2270at 505.391 kb on + strand, within Ac3H11_2270at 505.437 kb on + strand, within Ac3H11_2270at 505.437 kb on + strand, within Ac3H11_2270at 505.437 kb on + strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.438 kb on - strand, within Ac3H11_2270at 505.536 kb on + strand, within Ac3H11_2270at 505.536 kb on + strand, within Ac3H11_2270at 505.536 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.563 kb on + strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 505.564 kb on - strand, within Ac3H11_2270at 506.527 kb on - strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.586 kb on + strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.587 kb on - strand, within Ac3H11_2271at 506.690 kb on - strandat 506.779 kb on + strandat 506.779 kb on + strandat 506.938 kb on - strand, within Ac3H11_2272at 506.938 kb on - strand, within Ac3H11_2272at 507.285 kb on + strand, within Ac3H11_2272at 507.286 kb on - strand, within Ac3H11_2272at 507.312 kb on + strand, within Ac3H11_2272at 507.312 kb on + strand, within Ac3H11_2272at 507.312 kb on + strand, within Ac3H11_2272at 507.312 kb on + strand, within Ac3H11_2272at 507.313 kb on - strand, within Ac3H11_2272at 507.313 kb on - strand, within Ac3H11_2272at 507.316 kb on - strand, within Ac3H11_2272at 507.316 kb on - strand, within Ac3H11_2272at 507.316 kb on - strand, within Ac3H11_2272at 507.345 kb on + strand, within Ac3H11_2272at 507.345 kb on + strand, within Ac3H11_2272at 507.345 kb on + strand, within Ac3H11_2272at 507.345 kb on + strand, within Ac3H11_2272at 507.345 kb on + strand, within Ac3H11_2272at 507.345 kb on + strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.346 kb on - strand, within Ac3H11_2272at 507.348 kb on + strand, within Ac3H11_2272at 507.349 kb on - strand, within Ac3H11_2272at 507.349 kb on - strand, within Ac3H11_2272

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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504,810 + Ac3H11_2270 0.18 +0.9
504,930 + Ac3H11_2270 0.28 +2.9
504,930 + Ac3H11_2270 0.28 +0.3
504,930 + Ac3H11_2270 0.28 +1.0
504,930 + Ac3H11_2270 0.28 -0.5
504,930 + Ac3H11_2270 0.28 -1.6
504,930 + Ac3H11_2270 0.28 +0.2
504,930 + Ac3H11_2270 0.28 -0.8
504,930 + Ac3H11_2270 0.28 -1.5
504,931 - Ac3H11_2270 0.28 +0.6
504,931 - Ac3H11_2270 0.28 +2.7
504,931 - Ac3H11_2270 0.28 -2.8
505,161 + Ac3H11_2270 0.48 +1.4
505,161 + Ac3H11_2270 0.48 -0.5
505,161 + Ac3H11_2270 0.48 -0.7
505,161 + Ac3H11_2270 0.48 -0.8
505,161 + Ac3H11_2270 0.48 +0.0
505,161 + Ac3H11_2270 0.48 +1.2
505,162 - Ac3H11_2270 0.48 +1.2
505,162 - Ac3H11_2270 0.48 +0.4
505,162 - Ac3H11_2270 0.48 -1.1
505,162 - Ac3H11_2270 0.48 -0.8
505,391 + Ac3H11_2270 0.67 +1.9
505,437 + Ac3H11_2270 0.71 -0.6
505,437 + Ac3H11_2270 0.71 -0.5
505,437 + Ac3H11_2270 0.71 -0.9
505,438 - Ac3H11_2270 0.71 +2.3
505,438 - Ac3H11_2270 0.71 -1.3
505,438 - Ac3H11_2270 0.71 -0.9
505,438 - Ac3H11_2270 0.71 -3.3
505,438 - Ac3H11_2270 0.71 -2.8
505,438 - Ac3H11_2270 0.71 -0.2
505,438 - Ac3H11_2270 0.71 -1.4
505,536 + Ac3H11_2270 0.80 +0.7
505,536 + Ac3H11_2270 0.80 -1.6
505,536 + Ac3H11_2270 0.80 -1.5
505,563 + Ac3H11_2270 0.82 -0.7
505,563 + Ac3H11_2270 0.82 -0.7
505,563 + Ac3H11_2270 0.82 -1.4
505,563 + Ac3H11_2270 0.82 -1.4
505,563 + Ac3H11_2270 0.82 +0.7
505,563 + Ac3H11_2270 0.82 +1.3
505,563 + Ac3H11_2270 0.82 +0.4
505,564 - Ac3H11_2270 0.82 +2.2
505,564 - Ac3H11_2270 0.82 -0.7
505,564 - Ac3H11_2270 0.82 +0.5
505,564 - Ac3H11_2270 0.82 +0.4
505,564 - Ac3H11_2270 0.82 -0.5
506,527 - Ac3H11_2271 0.80 -0.8
506,586 + Ac3H11_2271 0.86 +0.1
506,586 + Ac3H11_2271 0.86 +1.0
506,586 + Ac3H11_2271 0.86 +1.2
506,586 + Ac3H11_2271 0.86 -1.4
506,587 - Ac3H11_2271 0.86 -0.5
506,587 - Ac3H11_2271 0.86 +0.9
506,587 - Ac3H11_2271 0.86 +1.7
506,587 - Ac3H11_2271 0.86 -0.8
506,587 - Ac3H11_2271 0.86 +0.3
506,587 - Ac3H11_2271 0.86 +1.6
506,587 - Ac3H11_2271 0.86 +2.6
506,587 - Ac3H11_2271 0.86 +1.1
506,587 - Ac3H11_2271 0.86 -1.8
506,587 - Ac3H11_2271 0.86 -0.9
506,690 - +0.2
506,779 + -0.6
506,779 + -0.5
506,938 - Ac3H11_2272 0.12 +0.3
506,938 - Ac3H11_2272 0.12 +0.9
507,285 + Ac3H11_2272 0.44 +2.8
507,286 - Ac3H11_2272 0.44 +0.7
507,312 + Ac3H11_2272 0.47 +1.6
507,312 + Ac3H11_2272 0.47 -1.2
507,312 + Ac3H11_2272 0.47 +1.0
507,312 + Ac3H11_2272 0.47 +1.6
507,313 - Ac3H11_2272 0.47 -1.3
507,313 - Ac3H11_2272 0.47 -1.4
507,316 - Ac3H11_2272 0.47 +1.1
507,316 - Ac3H11_2272 0.47 -1.4
507,316 - Ac3H11_2272 0.47 -0.8
507,345 + Ac3H11_2272 0.50 -0.4
507,345 + Ac3H11_2272 0.50 -1.6
507,345 + Ac3H11_2272 0.50 +1.6
507,345 + Ac3H11_2272 0.50 -1.3
507,345 + Ac3H11_2272 0.50 -1.4
507,345 + Ac3H11_2272 0.50 +0.7
507,346 - Ac3H11_2272 0.50 -0.3
507,346 - Ac3H11_2272 0.50 -0.9
507,346 - Ac3H11_2272 0.50 -1.2
507,346 - Ac3H11_2272 0.50 -0.4
507,346 - Ac3H11_2272 0.50 +0.4
507,346 - Ac3H11_2272 0.50 +0.1
507,346 - Ac3H11_2272 0.50 -0.4
507,346 - Ac3H11_2272 0.50 -0.8
507,346 - Ac3H11_2272 0.50 -1.6
507,346 - Ac3H11_2272 0.50 -0.8
507,346 - Ac3H11_2272 0.50 +0.0
507,346 - Ac3H11_2272 0.50 +0.8
507,348 + Ac3H11_2272 0.50 -0.2
507,349 - Ac3H11_2272 0.50 +1.2
507,349 - Ac3H11_2272 0.50 +0.5

Or see this region's nucleotide sequence