Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2086

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2085 and Ac3H11_2086 are separated by 292 nucleotidesAc3H11_2086 and Ac3H11_2087 are separated by 94 nucleotidesAc3H11_2087 and Ac3H11_2088 are separated by 272 nucleotides Ac3H11_2085 - hypothetical protein, at 310,631 to 311,494 _2085 Ac3H11_2086 - Heat shock protein 60 family chaperone GroEL, at 311,787 to 313,439 _2086 Ac3H11_2087 - Heat shock protein 60 family co-chaperone GroES, at 313,534 to 313,824 _2087 Ac3H11_2088 - Streptococcal hemagglutinin protein, at 314,097 to 315,707 _2088 Position (kb) 311 312 313 314Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 310.918 kb on - strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.969 kb on + strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.970 kb on - strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.993 kb on + strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 310.994 kb on - strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.115 kb on + strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.116 kb on - strand, within Ac3H11_2085at 311.596 kb on + strandat 311.596 kb on + strandat 311.597 kb on - strandat 311.597 kb on - strandat 311.597 kb on - strandat 311.597 kb on - strandat 311.598 kb on + strandat 311.598 kb on + strandat 311.599 kb on - strandat 311.636 kb on + strandat 311.646 kb on + strandat 311.647 kb on - strandat 311.647 kb on - strandat 311.647 kb on - strandat 311.647 kb on - strandat 311.647 kb on - strandat 311.647 kb on - strandat 311.659 kb on + strandat 311.660 kb on - strandat 311.660 kb on - strandat 311.660 kb on - strandat 311.684 kb on - strandat 311.684 kb on - strandat 311.684 kb on - strandat 311.685 kb on + strandat 311.685 kb on + strandat 311.685 kb on + strandat 311.685 kb on + strandat 311.685 kb on + strandat 311.685 kb on + strandat 311.686 kb on - strandat 311.686 kb on - strandat 311.686 kb on - strandat 311.686 kb on - strandat 311.686 kb on - strandat 311.686 kb on - strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.788 kb on + strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 311.789 kb on - strandat 313.517 kb on - strandat 313.943 kb on + strandat 313.943 kb on + strandat 313.944 kb on - strandat 313.944 kb on - strandat 313.944 kb on - strandat 314.015 kb on + strandat 314.015 kb on + strandat 314.202 kb on + strandat 314.202 kb on + strandat 314.203 kb on - strandat 314.203 kb on - strandat 314.359 kb on + strand, within Ac3H11_2088at 314.359 kb on + strand, within Ac3H11_2088at 314.360 kb on - strand, within Ac3H11_2088at 314.360 kb on - strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.404 kb on + strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.405 kb on - strand, within Ac3H11_2088at 314.410 kb on + strand, within Ac3H11_2088at 314.410 kb on + strand, within Ac3H11_2088at 314.410 kb on + strand, within Ac3H11_2088at 314.410 kb on + strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088at 314.411 kb on - strand, within Ac3H11_2088

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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310,918 - Ac3H11_2085 0.33 -0.1
310,969 + Ac3H11_2085 0.39 +0.5
310,969 + Ac3H11_2085 0.39 +0.3
310,969 + Ac3H11_2085 0.39 -1.2
310,969 + Ac3H11_2085 0.39 -1.3
310,969 + Ac3H11_2085 0.39 -2.4
310,969 + Ac3H11_2085 0.39 +0.8
310,969 + Ac3H11_2085 0.39 -1.3
310,969 + Ac3H11_2085 0.39 +0.0
310,969 + Ac3H11_2085 0.39 -2.6
310,969 + Ac3H11_2085 0.39 +1.3
310,969 + Ac3H11_2085 0.39 -0.3
310,969 + Ac3H11_2085 0.39 -1.9
310,969 + Ac3H11_2085 0.39 -1.5
310,969 + Ac3H11_2085 0.39 +1.5
310,969 + Ac3H11_2085 0.39 +1.0
310,969 + Ac3H11_2085 0.39 -0.2
310,969 + Ac3H11_2085 0.39 -3.9
310,969 + Ac3H11_2085 0.39 -0.3
310,969 + Ac3H11_2085 0.39 -0.3
310,969 + Ac3H11_2085 0.39 -0.3
310,969 + Ac3H11_2085 0.39 +1.1
310,970 - Ac3H11_2085 0.39 +2.2
310,970 - Ac3H11_2085 0.39 -0.8
310,970 - Ac3H11_2085 0.39 +0.7
310,970 - Ac3H11_2085 0.39 +0.9
310,970 - Ac3H11_2085 0.39 +0.5
310,970 - Ac3H11_2085 0.39 -0.5
310,970 - Ac3H11_2085 0.39 -0.1
310,970 - Ac3H11_2085 0.39 -1.7
310,970 - Ac3H11_2085 0.39 +0.9
310,970 - Ac3H11_2085 0.39 +0.7
310,970 - Ac3H11_2085 0.39 +1.3
310,970 - Ac3H11_2085 0.39 +0.5
310,970 - Ac3H11_2085 0.39 +0.7
310,970 - Ac3H11_2085 0.39 +1.9
310,970 - Ac3H11_2085 0.39 -3.7
310,970 - Ac3H11_2085 0.39 +1.0
310,970 - Ac3H11_2085 0.39 +2.5
310,993 + Ac3H11_2085 0.42 -0.6
310,993 + Ac3H11_2085 0.42 -0.4
310,993 + Ac3H11_2085 0.42 -0.3
310,993 + Ac3H11_2085 0.42 +1.3
310,994 - Ac3H11_2085 0.42 -2.7
310,994 - Ac3H11_2085 0.42 -1.1
310,994 - Ac3H11_2085 0.42 -0.9
310,994 - Ac3H11_2085 0.42 -0.1
311,115 + Ac3H11_2085 0.56 +1.0
311,115 + Ac3H11_2085 0.56 +0.3
311,115 + Ac3H11_2085 0.56 -2.3
311,115 + Ac3H11_2085 0.56 +1.4
311,115 + Ac3H11_2085 0.56 -0.2
311,115 + Ac3H11_2085 0.56 +0.5
311,115 + Ac3H11_2085 0.56 +1.3
311,115 + Ac3H11_2085 0.56 +1.6
311,116 - Ac3H11_2085 0.56 -2.3
311,116 - Ac3H11_2085 0.56 -0.8
311,116 - Ac3H11_2085 0.56 +0.9
311,116 - Ac3H11_2085 0.56 +0.9
311,116 - Ac3H11_2085 0.56 -0.1
311,116 - Ac3H11_2085 0.56 +0.3
311,596 + +1.1
311,596 + +1.3
311,597 - +0.1
311,597 - +0.4
311,597 - +0.2
311,597 - -1.1
311,598 + -0.1
311,598 + +0.5
311,599 - +0.7
311,636 + -2.7
311,646 + +0.3
311,647 - -3.8
311,647 - -0.1
311,647 - -1.7
311,647 - -1.2
311,647 - +1.1
311,647 - -0.6
311,659 + +1.5
311,660 - -0.9
311,660 - -3.6
311,660 - -0.1
311,684 - -3.7
311,684 - +1.2
311,684 - -0.5
311,685 + -0.2
311,685 + -0.9
311,685 + +1.9
311,685 + +0.5
311,685 + +0.5
311,685 + +0.2
311,686 - +1.7
311,686 - -1.0
311,686 - -0.9
311,686 - -0.6
311,686 - +0.6
311,686 - -0.8
311,788 + +1.4
311,788 + +0.1
311,788 + -0.6
311,788 + +2.2
311,788 + -1.3
311,788 + +0.1
311,788 + +1.9
311,788 + -0.4
311,788 + +2.1
311,788 + -0.9
311,788 + +1.1
311,789 - -0.0
311,789 - +0.3
311,789 - +1.6
311,789 - +1.3
311,789 - +0.7
311,789 - +0.3
311,789 - +2.1
311,789 - +1.5
311,789 - +2.1
311,789 - +1.5
311,789 - +0.4
311,789 - -0.9
311,789 - -1.0
313,517 - +0.4
313,943 + -0.1
313,943 + -1.3
313,944 - +0.4
313,944 - -0.3
313,944 - +0.1
314,015 + +1.0
314,015 + +0.6
314,202 + +0.8
314,202 + +0.7
314,203 - -0.1
314,203 - -0.5
314,359 + Ac3H11_2088 0.16 -1.4
314,359 + Ac3H11_2088 0.16 +1.2
314,360 - Ac3H11_2088 0.16 +0.7
314,360 - Ac3H11_2088 0.16 +0.6
314,404 + Ac3H11_2088 0.19 -1.1
314,404 + Ac3H11_2088 0.19 +1.8
314,404 + Ac3H11_2088 0.19 +0.2
314,404 + Ac3H11_2088 0.19 -2.2
314,404 + Ac3H11_2088 0.19 +0.9
314,404 + Ac3H11_2088 0.19 -1.7
314,404 + Ac3H11_2088 0.19 +0.4
314,404 + Ac3H11_2088 0.19 +0.8
314,405 - Ac3H11_2088 0.19 -3.3
314,405 - Ac3H11_2088 0.19 -0.6
314,405 - Ac3H11_2088 0.19 +0.8
314,405 - Ac3H11_2088 0.19 +0.5
314,405 - Ac3H11_2088 0.19 -0.4
314,405 - Ac3H11_2088 0.19 -1.8
314,405 - Ac3H11_2088 0.19 -0.2
314,405 - Ac3H11_2088 0.19 -0.1
314,405 - Ac3H11_2088 0.19 -1.3
314,410 + Ac3H11_2088 0.19 +1.5
314,410 + Ac3H11_2088 0.19 -2.3
314,410 + Ac3H11_2088 0.19 +0.9
314,410 + Ac3H11_2088 0.19 -1.1
314,411 - Ac3H11_2088 0.19 +1.4
314,411 - Ac3H11_2088 0.19 -2.7
314,411 - Ac3H11_2088 0.19 -0.7
314,411 - Ac3H11_2088 0.19 -1.8
314,411 - Ac3H11_2088 0.19 -0.2
314,411 - Ac3H11_2088 0.19 -0.1
314,411 - Ac3H11_2088 0.19 -0.7
314,411 - Ac3H11_2088 0.19 -2.9

Or see this region's nucleotide sequence