Experiment: copper (II) chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1965 and Ac3H11_1966 are separated by 234 nucleotides Ac3H11_1966 and Ac3H11_1967 overlap by 4 nucleotides Ac3H11_1967 and Ac3H11_1968 overlap by 4 nucleotides
Ac3H11_1965 - Heat shock protease, at 177,346 to 178,224
_1965
Ac3H11_1966 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 178,459 to 180,033
_1966
Ac3H11_1967 - hypothetical protein, at 180,030 to 180,197
_1967
Ac3H11_1968 - Transcriptional regulator, AraC family, at 180,194 to 181,225
_1968
Position (kb) 178
179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 177.935 kb on - strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.937 kb on + strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 177.938 kb on - strand, within Ac3H11_1965 at 178.222 kb on + strand at 178.223 kb on - strand at 178.360 kb on + strand at 178.374 kb on + strand at 178.375 kb on - strand at 178.375 kb on - strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.458 kb on + strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.459 kb on - strand at 178.859 kb on + strand, within Ac3H11_1966 at 178.859 kb on + strand, within Ac3H11_1966 at 178.860 kb on - strand, within Ac3H11_1966 at 178.860 kb on - strand, within Ac3H11_1966 at 178.860 kb on - strand, within Ac3H11_1966 at 178.933 kb on + strand, within Ac3H11_1966 at 178.933 kb on + strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.934 kb on - strand, within Ac3H11_1966 at 178.963 kb on + strand, within Ac3H11_1966 at 179.143 kb on - strand, within Ac3H11_1966 at 180.031 kb on + strand at 180.032 kb on - strand at 180.032 kb on - strand at 180.032 kb on - strand at 180.060 kb on + strand, within Ac3H11_1967 at 180.060 kb on + strand, within Ac3H11_1967 at 180.061 kb on - strand, within Ac3H11_1967 at 180.061 kb on - strand, within Ac3H11_1967 at 180.061 kb on - strand, within Ac3H11_1967 at 180.276 kb on + strand at 180.316 kb on - strand, within Ac3H11_1968 at 180.350 kb on + strand, within Ac3H11_1968 at 180.350 kb on + strand, within Ac3H11_1968 at 180.351 kb on - strand, within Ac3H11_1968 at 180.351 kb on - strand, within Ac3H11_1968 at 180.796 kb on - strand, within Ac3H11_1968
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM remove 177,935 - Ac3H11_1965 0.67 -0.6 177,937 + Ac3H11_1965 0.67 -0.8 177,937 + Ac3H11_1965 0.67 -1.0 177,937 + Ac3H11_1965 0.67 -1.3 177,937 + Ac3H11_1965 0.67 -1.8 177,938 - Ac3H11_1965 0.67 -1.5 177,938 - Ac3H11_1965 0.67 -2.0 177,938 - Ac3H11_1965 0.67 -1.6 177,938 - Ac3H11_1965 0.67 -0.4 177,938 - Ac3H11_1965 0.67 -0.5 177,938 - Ac3H11_1965 0.67 -1.5 177,938 - Ac3H11_1965 0.67 +3.4 178,222 + +2.1 178,223 - -0.2 178,360 + -1.8 178,374 + -0.8 178,375 - +0.1 178,375 - -0.5 178,458 + +0.8 178,458 + -0.0 178,458 + -1.8 178,458 + +1.1 178,458 + +1.1 178,458 + -3.6 178,459 - +1.5 178,459 - -3.0 178,459 - +0.4 178,459 - +0.6 178,459 - +1.2 178,459 - -0.1 178,459 - -0.1 178,459 - -0.1 178,459 - -3.2 178,859 + Ac3H11_1966 0.25 +0.3 178,859 + Ac3H11_1966 0.25 -0.8 178,860 - Ac3H11_1966 0.25 +0.3 178,860 - Ac3H11_1966 0.25 +0.3 178,860 - Ac3H11_1966 0.25 +0.8 178,933 + Ac3H11_1966 0.30 -0.5 178,933 + Ac3H11_1966 0.30 +0.2 178,934 - Ac3H11_1966 0.30 -1.2 178,934 - Ac3H11_1966 0.30 -0.6 178,934 - Ac3H11_1966 0.30 -2.4 178,934 - Ac3H11_1966 0.30 -0.5 178,963 + Ac3H11_1966 0.32 +2.2 179,143 - Ac3H11_1966 0.43 -0.3 180,031 + +0.1 180,032 - +0.2 180,032 - +0.0 180,032 - -0.4 180,060 + Ac3H11_1967 0.18 -1.7 180,060 + Ac3H11_1967 0.18 -0.6 180,061 - Ac3H11_1967 0.18 +0.7 180,061 - Ac3H11_1967 0.18 +0.7 180,061 - Ac3H11_1967 0.18 -1.5 180,276 + -2.0 180,316 - Ac3H11_1968 0.12 -2.0 180,350 + Ac3H11_1968 0.15 -1.5 180,350 + Ac3H11_1968 0.15 +0.5 180,351 - Ac3H11_1968 0.15 -0.3 180,351 - Ac3H11_1968 0.15 -0.3 180,796 - Ac3H11_1968 0.58 +0.2
Or see this region's nucleotide sequence