Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_184

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_183 and Ac3H11_184 are separated by 135 nucleotidesAc3H11_184 and Ac3H11_185 are separated by 105 nucleotides Ac3H11_183 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 71,091 to 74,063 _183 Ac3H11_184 - hypothetical protein, at 74,199 to 74,573 _184 Ac3H11_185 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 74,679 to 76,364 _185 Position (kb) 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 73.310 kb on - strand, within Ac3H11_183at 73.310 kb on - strand, within Ac3H11_183at 73.445 kb on - strand, within Ac3H11_183at 73.679 kb on - strand, within Ac3H11_183at 73.679 kb on - strand, within Ac3H11_183at 73.723 kb on + strand, within Ac3H11_183at 73.723 kb on + strand, within Ac3H11_183at 73.724 kb on - strand, within Ac3H11_183at 73.927 kb on + strandat 73.927 kb on + strandat 73.927 kb on + strandat 73.927 kb on + strandat 73.927 kb on + strandat 73.928 kb on - strandat 73.928 kb on - strandat 73.983 kb on + strandat 74.047 kb on + strandat 74.048 kb on - strandat 74.048 kb on - strandat 74.101 kb on + strandat 74.155 kb on + strandat 74.155 kb on + strandat 74.155 kb on + strandat 74.155 kb on + strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.156 kb on - strandat 74.434 kb on + strand, within Ac3H11_184at 74.434 kb on + strand, within Ac3H11_184at 74.776 kb on + strandat 74.776 kb on + strandat 74.776 kb on + strandat 74.776 kb on + strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 74.777 kb on - strandat 75.013 kb on + strand, within Ac3H11_185at 75.013 kb on + strand, within Ac3H11_185at 75.113 kb on - strand, within Ac3H11_185at 75.296 kb on - strand, within Ac3H11_185at 75.307 kb on + strand, within Ac3H11_185at 75.308 kb on - strand, within Ac3H11_185at 75.319 kb on + strand, within Ac3H11_185at 75.320 kb on - strand, within Ac3H11_185at 75.379 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.400 kb on + strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.401 kb on - strand, within Ac3H11_185at 75.541 kb on + strand, within Ac3H11_185at 75.541 kb on + strand, within Ac3H11_185at 75.541 kb on + strand, within Ac3H11_185at 75.542 kb on - strand, within Ac3H11_185at 75.542 kb on - strand, within Ac3H11_185at 75.542 kb on - strand, within Ac3H11_185at 75.542 kb on - strand, within Ac3H11_185

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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73,310 - Ac3H11_183 0.75 -0.3
73,310 - Ac3H11_183 0.75 -1.6
73,445 - Ac3H11_183 0.79 -0.8
73,679 - Ac3H11_183 0.87 +1.6
73,679 - Ac3H11_183 0.87 -1.2
73,723 + Ac3H11_183 0.89 -1.6
73,723 + Ac3H11_183 0.89 +2.4
73,724 - Ac3H11_183 0.89 +0.1
73,927 + +0.7
73,927 + -0.4
73,927 + -1.9
73,927 + -0.2
73,927 + +0.7
73,928 - -0.2
73,928 - +0.7
73,983 + +0.5
74,047 + -0.2
74,048 - -2.5
74,048 - -1.2
74,101 + +1.1
74,155 + -3.5
74,155 + -1.8
74,155 + +1.2
74,155 + -1.8
74,156 - +0.8
74,156 - -0.0
74,156 - +0.8
74,156 - -1.9
74,156 - -0.8
74,156 - +0.8
74,156 - -1.9
74,156 - +1.1
74,156 - +1.9
74,434 + Ac3H11_184 0.63 -0.0
74,434 + Ac3H11_184 0.63 -3.7
74,776 + +1.6
74,776 + -0.4
74,776 + -0.4
74,776 + -0.1
74,777 - +0.5
74,777 - -1.2
74,777 - +2.4
74,777 - -2.7
74,777 - -0.6
74,777 - -0.9
74,777 - +1.3
74,777 - -1.1
74,777 - +0.9
75,013 + Ac3H11_185 0.20 -0.3
75,013 + Ac3H11_185 0.20 -0.9
75,113 - Ac3H11_185 0.26 -0.5
75,296 - Ac3H11_185 0.37 +1.3
75,307 + Ac3H11_185 0.37 +1.2
75,308 - Ac3H11_185 0.37 -0.6
75,319 + Ac3H11_185 0.38 -3.3
75,320 - Ac3H11_185 0.38 -0.9
75,379 + Ac3H11_185 0.42 -0.4
75,400 + Ac3H11_185 0.43 +0.9
75,400 + Ac3H11_185 0.43 +0.6
75,400 + Ac3H11_185 0.43 +1.1
75,400 + Ac3H11_185 0.43 -0.9
75,400 + Ac3H11_185 0.43 +0.3
75,400 + Ac3H11_185 0.43 +0.5
75,400 + Ac3H11_185 0.43 +0.4
75,400 + Ac3H11_185 0.43 +0.2
75,400 + Ac3H11_185 0.43 -0.2
75,400 + Ac3H11_185 0.43 -1.9
75,401 - Ac3H11_185 0.43 +0.1
75,401 - Ac3H11_185 0.43 -0.1
75,401 - Ac3H11_185 0.43 -2.2
75,401 - Ac3H11_185 0.43 +4.0
75,401 - Ac3H11_185 0.43 -0.2
75,401 - Ac3H11_185 0.43 +0.6
75,401 - Ac3H11_185 0.43 -0.8
75,401 - Ac3H11_185 0.43 -1.9
75,401 - Ac3H11_185 0.43 -0.9
75,401 - Ac3H11_185 0.43 -0.6
75,401 - Ac3H11_185 0.43 -1.8
75,541 + Ac3H11_185 0.51 -2.3
75,541 + Ac3H11_185 0.51 +0.8
75,541 + Ac3H11_185 0.51 -1.2
75,542 - Ac3H11_185 0.51 -0.3
75,542 - Ac3H11_185 0.51 +0.6
75,542 - Ac3H11_185 0.51 +2.4
75,542 - Ac3H11_185 0.51 -0.4

Or see this region's nucleotide sequence