Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1319

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1318 and Ac3H11_1319 are separated by 190 nucleotidesAc3H11_1319 and Ac3H11_1320 are separated by 210 nucleotides Ac3H11_1318 - Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 5,541 to 6,584 _1318 Ac3H11_1319 - membrane protein, putative, at 6,775 to 7,848 _1319 Ac3H11_1320 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 8,059 to 9,684 _1320 Position (kb) 6 7 8Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 6.847 kb on + strandat 6.847 kb on + strandat 6.847 kb on + strandat 6.847 kb on + strandat 6.847 kb on + strandat 6.848 kb on - strandat 6.848 kb on - strandat 7.096 kb on + strand, within Ac3H11_1319at 7.096 kb on + strand, within Ac3H11_1319at 7.120 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.138 kb on + strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.139 kb on - strand, within Ac3H11_1319at 7.240 kb on + strand, within Ac3H11_1319at 7.240 kb on + strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.241 kb on - strand, within Ac3H11_1319at 7.309 kb on + strand, within Ac3H11_1319at 7.309 kb on + strand, within Ac3H11_1319at 7.310 kb on - strand, within Ac3H11_1319at 7.522 kb on + strand, within Ac3H11_1319at 7.522 kb on + strand, within Ac3H11_1319at 7.522 kb on + strand, within Ac3H11_1319at 7.523 kb on - strand, within Ac3H11_1319at 7.523 kb on - strand, within Ac3H11_1319at 7.523 kb on - strand, within Ac3H11_1319at 7.523 kb on - strand, within Ac3H11_1319at 7.682 kb on - strand, within Ac3H11_1319at 7.804 kb on + strandat 7.804 kb on + strandat 7.804 kb on + strandat 7.804 kb on + strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.805 kb on - strandat 7.846 kb on + strandat 7.847 kb on - strandat 7.847 kb on - strandat 7.948 kb on + strandat 7.948 kb on + strandat 7.980 kb on + strandat 7.981 kb on - strandat 7.981 kb on - strandat 8.317 kb on + strand, within Ac3H11_1320at 8.317 kb on + strand, within Ac3H11_1320at 8.317 kb on + strand, within Ac3H11_1320at 8.318 kb on - strand, within Ac3H11_1320at 8.476 kb on + strand, within Ac3H11_1320at 8.524 kb on + strand, within Ac3H11_1320at 8.525 kb on - strand, within Ac3H11_1320at 8.525 kb on - strand, within Ac3H11_1320at 8.525 kb on - strand, within Ac3H11_1320at 8.525 kb on - strand, within Ac3H11_1320at 8.572 kb on + strand, within Ac3H11_1320at 8.572 kb on + strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.573 kb on - strand, within Ac3H11_1320at 8.714 kb on - strand, within Ac3H11_1320

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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6,847 + -1.8
6,847 + +0.6
6,847 + +0.8
6,847 + -2.1
6,847 + -0.8
6,848 - +0.8
6,848 - +0.8
7,096 + Ac3H11_1319 0.30 -1.1
7,096 + Ac3H11_1319 0.30 -0.4
7,120 + Ac3H11_1319 0.32 +1.9
7,138 + Ac3H11_1319 0.34 +0.7
7,138 + Ac3H11_1319 0.34 +0.9
7,138 + Ac3H11_1319 0.34 +1.2
7,138 + Ac3H11_1319 0.34 -1.8
7,138 + Ac3H11_1319 0.34 +0.1
7,138 + Ac3H11_1319 0.34 +0.9
7,138 + Ac3H11_1319 0.34 +3.2
7,138 + Ac3H11_1319 0.34 -0.4
7,138 + Ac3H11_1319 0.34 +2.0
7,138 + Ac3H11_1319 0.34 +0.9
7,138 + Ac3H11_1319 0.34 +0.3
7,139 - Ac3H11_1319 0.34 +0.6
7,139 - Ac3H11_1319 0.34 -1.7
7,139 - Ac3H11_1319 0.34 +2.2
7,139 - Ac3H11_1319 0.34 -1.3
7,139 - Ac3H11_1319 0.34 +4.0
7,139 - Ac3H11_1319 0.34 +1.5
7,139 - Ac3H11_1319 0.34 +1.4
7,240 + Ac3H11_1319 0.43 -0.2
7,240 + Ac3H11_1319 0.43 +0.7
7,241 - Ac3H11_1319 0.43 +1.1
7,241 - Ac3H11_1319 0.43 +0.6
7,241 - Ac3H11_1319 0.43 -0.9
7,241 - Ac3H11_1319 0.43 -2.0
7,241 - Ac3H11_1319 0.43 +0.1
7,241 - Ac3H11_1319 0.43 +1.0
7,241 - Ac3H11_1319 0.43 +0.9
7,309 + Ac3H11_1319 0.50 -0.9
7,309 + Ac3H11_1319 0.50 +0.7
7,310 - Ac3H11_1319 0.50 -0.2
7,522 + Ac3H11_1319 0.70 -0.9
7,522 + Ac3H11_1319 0.70 -0.0
7,522 + Ac3H11_1319 0.70 +0.3
7,523 - Ac3H11_1319 0.70 -2.2
7,523 - Ac3H11_1319 0.70 -1.6
7,523 - Ac3H11_1319 0.70 +0.7
7,523 - Ac3H11_1319 0.70 -0.6
7,682 - Ac3H11_1319 0.84 -1.0
7,804 + -0.5
7,804 + -0.5
7,804 + -2.9
7,804 + +0.5
7,805 - -1.0
7,805 - +1.0
7,805 - -0.1
7,805 - -0.6
7,805 - -1.9
7,805 - +2.3
7,805 - -0.6
7,805 - +0.8
7,846 + -0.3
7,847 - +1.5
7,847 - -1.3
7,948 + -1.9
7,948 + -0.5
7,980 + -1.7
7,981 - +0.2
7,981 - -2.4
8,317 + Ac3H11_1320 0.16 +0.9
8,317 + Ac3H11_1320 0.16 +0.2
8,317 + Ac3H11_1320 0.16 +4.0
8,318 - Ac3H11_1320 0.16 +0.9
8,476 + Ac3H11_1320 0.26 -0.5
8,524 + Ac3H11_1320 0.29 +0.4
8,525 - Ac3H11_1320 0.29 +1.0
8,525 - Ac3H11_1320 0.29 +1.5
8,525 - Ac3H11_1320 0.29 -0.6
8,525 - Ac3H11_1320 0.29 -0.3
8,572 + Ac3H11_1320 0.32 +0.1
8,572 + Ac3H11_1320 0.32 -1.1
8,573 - Ac3H11_1320 0.32 +0.9
8,573 - Ac3H11_1320 0.32 +2.1
8,573 - Ac3H11_1320 0.32 -0.5
8,573 - Ac3H11_1320 0.32 +0.3
8,573 - Ac3H11_1320 0.32 -0.8
8,573 - Ac3H11_1320 0.32 -1.7
8,573 - Ac3H11_1320 0.32 -1.5
8,714 - Ac3H11_1320 0.40 -1.4

Or see this region's nucleotide sequence