Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1316

Experiment: copper (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1314 and Ac3H11_1315 are separated by 35 nucleotidesAc3H11_1315 and Ac3H11_1316 overlap by 4 nucleotidesAc3H11_1316 and Ac3H11_1317 are separated by 125 nucleotides Ac3H11_1314 - Phosphoserine phosphatase (EC 3.1.3.3), at 2,527 to 3,237 _1314 Ac3H11_1315 - Chromosomal replication initiator protein DnaA, at 3,273 to 3,977 _1315 Ac3H11_1316 - hypothetical protein, at 3,974 to 4,117 _1316 Ac3H11_1317 - Permeases of the major facilitator superfamily, at 4,243 to 5,460 _1317 Position (kb) 3 4 5Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4.185 kb on + strandat 4.185 kb on + strandat 4.186 kb on - strandat 4.186 kb on - strandat 4.502 kb on - strand, within Ac3H11_1317at 4.502 kb on - strand, within Ac3H11_1317at 4.897 kb on + strand, within Ac3H11_1317at 4.897 kb on + strand, within Ac3H11_1317at 4.897 kb on + strand, within Ac3H11_1317at 4.897 kb on + strand, within Ac3H11_1317at 4.898 kb on - strand, within Ac3H11_1317at 5.048 kb on - strand, within Ac3H11_1317

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2 mM
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4,185 + +3.3
4,185 + -2.2
4,186 - -0.2
4,186 - +1.0
4,502 - Ac3H11_1317 0.21 +1.9
4,502 - Ac3H11_1317 0.21 -0.1
4,897 + Ac3H11_1317 0.54 +1.0
4,897 + Ac3H11_1317 0.54 -0.8
4,897 + Ac3H11_1317 0.54 +1.6
4,897 + Ac3H11_1317 0.54 -0.8
4,898 - Ac3H11_1317 0.54 +2.0
5,048 - Ac3H11_1317 0.66 +0.3

Or see this region's nucleotide sequence