Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04885

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04880 and AZOBR_RS04885 are separated by 15 nucleotidesAZOBR_RS04885 and AZOBR_RS04890 overlap by 4 nucleotidesAZOBR_RS04890 and AZOBR_RS04895 overlap by 4 nucleotides AZOBR_RS04880: AZOBR_RS04880 - hypothetical protein, at 1,027,013 to 1,028,446 _RS04880 AZOBR_RS04885: AZOBR_RS04885 - ABC transporter permease, at 1,028,462 to 1,029,415 _RS04885 AZOBR_RS04890: AZOBR_RS04890 - putative ABC Transporter permease protein, at 1,029,412 to 1,030,257 _RS04890 AZOBR_RS04895: AZOBR_RS04895 - putative ABC transporter (ATP-binding protein); putative dipeptide/oligopeptide/nickel transporter, at 1,030,254 to 1,031,927 _RS04895 Position (kb) 1028 1029 1030Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1027.743 kb on - strand, within AZOBR_RS04880at 1027.887 kb on - strand, within AZOBR_RS04880at 1027.889 kb on + strand, within AZOBR_RS04880at 1027.889 kb on + strand, within AZOBR_RS04880at 1027.889 kb on + strand, within AZOBR_RS04880at 1027.889 kb on + strand, within AZOBR_RS04880at 1027.889 kb on + strand, within AZOBR_RS04880at 1027.890 kb on - strand, within AZOBR_RS04880at 1027.890 kb on - strand, within AZOBR_RS04880at 1027.940 kb on + strand, within AZOBR_RS04880at 1028.003 kb on + strand, within AZOBR_RS04880at 1028.003 kb on + strand, within AZOBR_RS04880at 1028.004 kb on - strand, within AZOBR_RS04880at 1028.090 kb on + strand, within AZOBR_RS04880at 1028.090 kb on + strand, within AZOBR_RS04880at 1028.090 kb on + strand, within AZOBR_RS04880at 1028.091 kb on - strand, within AZOBR_RS04880at 1028.091 kb on - strand, within AZOBR_RS04880at 1028.091 kb on - strand, within AZOBR_RS04880at 1028.285 kb on + strand, within AZOBR_RS04880at 1028.285 kb on + strand, within AZOBR_RS04880at 1028.285 kb on + strandat 1028.285 kb on + strand, within AZOBR_RS04880at 1028.285 kb on + strand, within AZOBR_RS04880at 1028.286 kb on - strand, within AZOBR_RS04880at 1028.286 kb on - strand, within AZOBR_RS04880at 1028.348 kb on + strandat 1028.349 kb on - strandat 1028.383 kb on + strandat 1028.383 kb on + strandat 1028.384 kb on - strandat 1028.451 kb on + strandat 1028.452 kb on - strandat 1028.676 kb on + strand, within AZOBR_RS04885at 1028.676 kb on + strand, within AZOBR_RS04885at 1028.676 kb on + strand, within AZOBR_RS04885at 1028.676 kb on + strand, within AZOBR_RS04885at 1028.677 kb on - strand, within AZOBR_RS04885at 1028.677 kb on - strand, within AZOBR_RS04885at 1028.677 kb on - strand, within AZOBR_RS04885at 1028.677 kb on - strand, within AZOBR_RS04885at 1028.960 kb on + strand, within AZOBR_RS04885at 1028.960 kb on + strand, within AZOBR_RS04885at 1028.961 kb on - strand, within AZOBR_RS04885at 1028.961 kb on - strand, within AZOBR_RS04885at 1029.095 kb on + strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.096 kb on - strand, within AZOBR_RS04885at 1029.206 kb on + strand, within AZOBR_RS04885at 1029.207 kb on - strand, within AZOBR_RS04885at 1029.207 kb on - strand, within AZOBR_RS04885at 1029.338 kb on + strandat 1029.339 kb on - strandat 1029.589 kb on + strand, within AZOBR_RS04890at 1029.590 kb on - strand, within AZOBR_RS04890at 1029.590 kb on - strand, within AZOBR_RS04890at 1029.869 kb on - strand, within AZOBR_RS04890at 1030.165 kb on + strand, within AZOBR_RS04890

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,027,743 - AZOBR_RS04880 0.51 +0.8
1,027,887 - AZOBR_RS04880 0.61 -0.0
1,027,889 + AZOBR_RS04880 0.61 +1.0
1,027,889 + AZOBR_RS04880 0.61 -0.5
1,027,889 + AZOBR_RS04880 0.61 -0.1
1,027,889 + AZOBR_RS04880 0.61 -0.7
1,027,889 + AZOBR_RS04880 0.61 -2.1
1,027,890 - AZOBR_RS04880 0.61 +0.1
1,027,890 - AZOBR_RS04880 0.61 -0.8
1,027,940 + AZOBR_RS04880 0.65 -1.6
1,028,003 + AZOBR_RS04880 0.69 -0.1
1,028,003 + AZOBR_RS04880 0.69 +0.7
1,028,004 - AZOBR_RS04880 0.69 -1.1
1,028,090 + AZOBR_RS04880 0.75 +1.7
1,028,090 + AZOBR_RS04880 0.75 -0.2
1,028,090 + AZOBR_RS04880 0.75 +0.8
1,028,091 - AZOBR_RS04880 0.75 +0.2
1,028,091 - AZOBR_RS04880 0.75 +0.4
1,028,091 - AZOBR_RS04880 0.75 +1.1
1,028,285 + AZOBR_RS04880 0.89 +0.1
1,028,285 + AZOBR_RS04880 0.89 -0.4
1,028,285 + +0.9
1,028,285 + AZOBR_RS04880 0.89 -0.3
1,028,285 + AZOBR_RS04880 0.89 -0.5
1,028,286 - AZOBR_RS04880 0.89 +0.0
1,028,286 - AZOBR_RS04880 0.89 +0.2
1,028,348 + +0.0
1,028,349 - +0.0
1,028,383 + +0.2
1,028,383 + -0.1
1,028,384 - +0.2
1,028,451 + +0.1
1,028,452 - +0.1
1,028,676 + AZOBR_RS04885 0.22 -0.3
1,028,676 + AZOBR_RS04885 0.22 +0.1
1,028,676 + AZOBR_RS04885 0.22 -0.2
1,028,676 + AZOBR_RS04885 0.22 -0.1
1,028,677 - AZOBR_RS04885 0.23 +0.0
1,028,677 - AZOBR_RS04885 0.23 +0.3
1,028,677 - AZOBR_RS04885 0.23 -0.8
1,028,677 - AZOBR_RS04885 0.23 +0.1
1,028,960 + AZOBR_RS04885 0.52 -0.0
1,028,960 + AZOBR_RS04885 0.52 -1.0
1,028,961 - AZOBR_RS04885 0.52 +1.8
1,028,961 - AZOBR_RS04885 0.52 -0.3
1,029,095 + AZOBR_RS04885 0.66 -1.7
1,029,096 - AZOBR_RS04885 0.66 -0.3
1,029,096 - AZOBR_RS04885 0.66 -0.1
1,029,096 - AZOBR_RS04885 0.66 -0.6
1,029,096 - AZOBR_RS04885 0.66 -2.4
1,029,096 - AZOBR_RS04885 0.66 -2.5
1,029,096 - AZOBR_RS04885 0.66 +0.2
1,029,096 - AZOBR_RS04885 0.66 -0.0
1,029,206 + AZOBR_RS04885 0.78 -3.3
1,029,207 - AZOBR_RS04885 0.78 -0.6
1,029,207 - AZOBR_RS04885 0.78 +0.6
1,029,338 + -0.3
1,029,339 - -1.4
1,029,589 + AZOBR_RS04890 0.21 +0.2
1,029,590 - AZOBR_RS04890 0.21 -0.0
1,029,590 - AZOBR_RS04890 0.21 +0.2
1,029,869 - AZOBR_RS04890 0.54 -0.7
1,030,165 + AZOBR_RS04890 0.89 +0.3

Or see this region's nucleotide sequence