Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_12445

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_12440 and AO353_12445 are separated by 268 nucleotidesAO353_12445 and AO353_12450 are separated by 233 nucleotidesAO353_12450 and AO353_12455 are separated by 8 nucleotides AO353_12440: AO353_12440 - arginine--tRNA ligase, at 2,734,708 to 2,736,444 _12440 AO353_12445: AO353_12445 - primosomal protein N', at 2,736,713 to 2,738,932 _12445 AO353_12450: AO353_12450 - 50S ribosomal protein L31, at 2,739,166 to 2,739,381 _12450 AO353_12455: AO353_12455 - nuclease, at 2,739,390 to 2,740,208 _12455 Position (kb) 2736 2737 2738 2739Strain fitness (log2 ratio) -2 -1 0 1 2at 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.539 kb on + strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.540 kb on - strandat 2736.556 kb on + strandat 2736.556 kb on + strandat 2736.557 kb on - strandat 2736.557 kb on - strandat 2736.557 kb on - strandat 2736.570 kb on - strandat 2736.570 kb on - strandat 2736.570 kb on - strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.705 kb on + strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.706 kb on - strandat 2736.717 kb on + strandat 2736.717 kb on + strandat 2736.718 kb on - strandat 2736.718 kb on - strandat 2736.718 kb on - strandat 2738.993 kb on + strandat 2738.993 kb on + strandat 2738.994 kb on - strandat 2738.994 kb on - strandat 2739.003 kb on + strandat 2739.003 kb on + strandat 2739.003 kb on + strandat 2739.003 kb on + strandat 2739.003 kb on + strandat 2739.004 kb on - strandat 2739.004 kb on - strandat 2739.004 kb on - strandat 2739.006 kb on + strandat 2739.006 kb on + strandat 2739.007 kb on - strandat 2739.007 kb on - strandat 2739.007 kb on - strandat 2739.007 kb on - strandat 2739.190 kb on + strand, within AO353_12450at 2739.407 kb on - strandat 2739.407 kb on - strandat 2739.407 kb on - strandat 2739.455 kb on + strandat 2739.455 kb on + strandat 2739.456 kb on - strandat 2739.599 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.756 kb on + strand, within AO353_12455at 2739.757 kb on - strand, within AO353_12455at 2739.757 kb on - strand, within AO353_12455at 2739.913 kb on + strand, within AO353_12455

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,736,539 + -0.1
2,736,539 + -0.6
2,736,539 + -0.9
2,736,539 + -0.1
2,736,539 + -0.6
2,736,539 + +1.0
2,736,539 + -0.3
2,736,539 + +1.5
2,736,539 + +2.2
2,736,539 + +0.9
2,736,539 + -1.8
2,736,539 + -0.7
2,736,540 - +0.5
2,736,540 - +0.7
2,736,540 - -0.4
2,736,540 - -0.5
2,736,540 - +0.7
2,736,540 - +0.7
2,736,540 - -0.8
2,736,540 - +0.6
2,736,540 - -0.7
2,736,540 - -0.3
2,736,540 - +0.9
2,736,540 - +1.4
2,736,540 - +0.1
2,736,540 - +0.1
2,736,540 - -0.1
2,736,540 - -0.4
2,736,540 - -0.3
2,736,540 - -0.2
2,736,556 + -0.4
2,736,556 + -1.6
2,736,557 - +0.1
2,736,557 - +0.9
2,736,557 - +0.6
2,736,570 - -0.5
2,736,570 - +0.1
2,736,570 - -1.2
2,736,705 + -0.4
2,736,705 + +0.7
2,736,705 + +0.3
2,736,705 + +0.7
2,736,705 + +0.6
2,736,705 + -0.4
2,736,705 + -0.5
2,736,705 + +1.1
2,736,705 + +0.5
2,736,705 + -1.1
2,736,705 + -0.8
2,736,705 + -0.3
2,736,705 + -0.8
2,736,706 - -0.3
2,736,706 - -0.9
2,736,706 - -0.3
2,736,706 - -1.1
2,736,706 - -0.2
2,736,706 - +1.3
2,736,706 - +0.2
2,736,706 - -1.2
2,736,717 + +0.1
2,736,717 + -0.4
2,736,718 - +1.7
2,736,718 - -0.3
2,736,718 - +0.6
2,738,993 + -1.1
2,738,993 + +0.5
2,738,994 - +0.2
2,738,994 - +1.6
2,739,003 + -0.9
2,739,003 + -0.7
2,739,003 + +0.3
2,739,003 + -0.6
2,739,003 + -0.2
2,739,004 - -0.4
2,739,004 - -0.5
2,739,004 - +0.5
2,739,006 + -0.7
2,739,006 + +0.1
2,739,007 - +0.3
2,739,007 - +0.0
2,739,007 - -1.1
2,739,007 - +0.1
2,739,190 + AO353_12450 0.11 +0.3
2,739,407 - +1.3
2,739,407 - -0.1
2,739,407 - +1.9
2,739,455 + +0.9
2,739,455 + +0.2
2,739,456 - +0.3
2,739,599 + AO353_12455 0.26 +0.2
2,739,756 + AO353_12455 0.45 -0.3
2,739,756 + AO353_12455 0.45 +0.5
2,739,756 + AO353_12455 0.45 -0.1
2,739,756 + AO353_12455 0.45 +0.9
2,739,756 + AO353_12455 0.45 +0.2
2,739,757 - AO353_12455 0.45 +0.0
2,739,757 - AO353_12455 0.45 +0.3
2,739,913 + AO353_12455 0.64 +0.2

Or see this region's nucleotide sequence