Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02000

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01995 and AO353_02000 are separated by 16 nucleotidesAO353_02000 and AO353_02005 overlap by 11 nucleotidesAO353_02005 and AO353_02010 are separated by 32 nucleotides AO353_01995: AO353_01995 - hypothetical protein, at 422,628 to 426,335 _01995 AO353_02000: AO353_02000 - polysaccharide/polyol phosphate ABC transporter ATP-binding protein, at 426,352 to 427,641 _02000 AO353_02005: AO353_02005 - hypothetical protein, at 427,631 to 428,440 _02005 AO353_02010: AO353_02010 - glycosyl transferase family 1, at 428,473 to 429,720 _02010 Position (kb) 426 427 428Strain fitness (log2 ratio) -3 -2 -1 0 1at 425.404 kb on + strand, within AO353_01995at 425.404 kb on + strand, within AO353_01995at 425.426 kb on + strand, within AO353_01995at 425.521 kb on + strand, within AO353_01995at 425.789 kb on + strandat 426.354 kb on - strandat 426.354 kb on - strandat 426.598 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.749 kb on - strand, within AO353_02000at 426.751 kb on - strand, within AO353_02000at 426.868 kb on - strand, within AO353_02000at 426.911 kb on - strand, within AO353_02000at 426.957 kb on - strand, within AO353_02000at 426.961 kb on - strand, within AO353_02000at 426.988 kb on - strand, within AO353_02000at 427.159 kb on - strand, within AO353_02000at 427.503 kb on + strand, within AO353_02000at 427.504 kb on - strand, within AO353_02000at 427.584 kb on - strandat 427.584 kb on - strandat 427.587 kb on + strandat 427.988 kb on + strand, within AO353_02005at 427.989 kb on - strand, within AO353_02005at 428.132 kb on - strand, within AO353_02005at 428.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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425,404 + AO353_01995 0.75 +0.9
425,404 + AO353_01995 0.75 +0.1
425,426 + AO353_01995 0.75 -0.3
425,521 + AO353_01995 0.78 -0.3
425,789 + +0.3
426,354 - -1.4
426,354 - +0.5
426,598 - AO353_02000 0.19 -0.1
426,749 - AO353_02000 0.31 -1.1
426,749 - AO353_02000 0.31 -1.5
426,751 - AO353_02000 0.31 -1.0
426,868 - AO353_02000 0.40 +0.1
426,911 - AO353_02000 0.43 -0.7
426,957 - AO353_02000 0.47 -2.8
426,961 - AO353_02000 0.47 -2.1
426,988 - AO353_02000 0.49 +0.3
427,159 - AO353_02000 0.63 -1.7
427,503 + AO353_02000 0.89 -0.7
427,504 - AO353_02000 0.89 -0.5
427,584 - -1.5
427,584 - -0.3
427,587 + +0.9
427,988 + AO353_02005 0.44 -1.4
427,989 - AO353_02005 0.44 +1.3
428,132 - AO353_02005 0.62 +0.4
428,387 - -0.5

Or see this region's nucleotide sequence