Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2991

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2990 and DvMF_2991 are separated by 84 nucleotidesDvMF_2991 and DvMF_2992 are separated by 143 nucleotides DvMF_2990: DvMF_2990 - Isoprenylcysteine carboxyl methyltransferase (RefSeq), at 3,771,100 to 3,771,780 _2990 DvMF_2991: DvMF_2991 - Radical SAM domain protein (RefSeq), at 3,771,865 to 3,773,058 _2991 DvMF_2992: DvMF_2992 - ATPase, P-type (transporting), HAD superfamily, subfamily IC (RefSeq), at 3,773,202 to 3,776,096 _2992 Position (kb) 3771 3772 3773 3774Strain fitness (log2 ratio) -1 0 1at 3770.870 kb on - strandat 3770.905 kb on - strandat 3770.945 kb on + strandat 3771.055 kb on + strandat 3771.137 kb on - strandat 3771.455 kb on - strand, within DvMF_2990at 3771.774 kb on + strandat 3771.891 kb on - strandat 3772.028 kb on - strand, within DvMF_2991at 3772.043 kb on + strand, within DvMF_2991at 3772.190 kb on + strand, within DvMF_2991at 3772.208 kb on + strand, within DvMF_2991at 3772.333 kb on + strand, within DvMF_2991at 3772.359 kb on + strand, within DvMF_2991at 3772.663 kb on - strand, within DvMF_2991at 3772.942 kb on - strandat 3773.082 kb on + strandat 3773.258 kb on + strandat 3773.306 kb on + strandat 3773.333 kb on - strandat 3773.592 kb on + strand, within DvMF_2992at 3773.593 kb on - strand, within DvMF_2992at 3773.640 kb on - strand, within DvMF_2992at 3773.708 kb on + strand, within DvMF_2992at 3773.720 kb on + strand, within DvMF_2992

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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3,770,870 - -0.4
3,770,905 - -0.3
3,770,945 + -0.6
3,771,055 + -0.3
3,771,137 - -0.4
3,771,455 - DvMF_2990 0.52 -1.7
3,771,774 + -0.3
3,771,891 - +0.7
3,772,028 - DvMF_2991 0.14 -0.3
3,772,043 + DvMF_2991 0.15 -0.1
3,772,190 + DvMF_2991 0.27 -0.2
3,772,208 + DvMF_2991 0.29 +0.0
3,772,333 + DvMF_2991 0.39 -0.2
3,772,359 + DvMF_2991 0.41 -0.0
3,772,663 - DvMF_2991 0.67 +0.3
3,772,942 - -0.5
3,773,082 + +0.4
3,773,258 + -0.9
3,773,306 + -0.3
3,773,333 - +0.7
3,773,592 + DvMF_2992 0.13 -0.2
3,773,593 - DvMF_2992 0.14 -0.1
3,773,640 - DvMF_2992 0.15 -0.2
3,773,708 + DvMF_2992 0.17 +0.6
3,773,720 + DvMF_2992 0.18 +0.4

Or see this region's nucleotide sequence