Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3730 and Shewana3_3731 are separated by 44 nucleotides Shewana3_3731 and Shewana3_3732 overlap by 1 nucleotides Shewana3_3732 and Shewana3_3733 overlap by 8 nucleotides
Shewana3_3730: Shewana3_3730 - Sec-independent protein translocase TatC (RefSeq), at 4,471,915 to 4,472,664
_3730
Shewana3_3731: Shewana3_3731 - hypothetical protein (RefSeq), at 4,472,709 to 4,473,239
_3731
Shewana3_3732: Shewana3_3732 - Sec-independent protein translocase TatD (RefSeq), at 4,473,239 to 4,474,042
_3732
Shewana3_3733: Shewana3_3733 - diguanylate cyclase (RefSeq), at 4,474,035 to 4,475,912
_3733
Position (kb) 4473
4474
4475 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4472.257 kb on - strand, within Shewana3_3730 at 4472.465 kb on - strand, within Shewana3_3730 at 4472.547 kb on + strand, within Shewana3_3730 at 4472.736 kb on + strand at 4472.736 kb on + strand at 4472.744 kb on - strand at 4472.756 kb on + strand at 4472.756 kb on + strand at 4472.764 kb on - strand, within Shewana3_3731 at 4472.892 kb on + strand, within Shewana3_3731 at 4472.939 kb on - strand, within Shewana3_3731 at 4472.959 kb on - strand, within Shewana3_3731 at 4472.969 kb on - strand, within Shewana3_3731 at 4473.208 kb on + strand at 4473.215 kb on + strand at 4473.465 kb on + strand, within Shewana3_3732 at 4473.533 kb on + strand, within Shewana3_3732 at 4473.583 kb on - strand, within Shewana3_3732 at 4473.861 kb on + strand, within Shewana3_3732 at 4473.870 kb on - strand, within Shewana3_3732 at 4473.882 kb on + strand, within Shewana3_3732 at 4474.126 kb on + strand at 4474.177 kb on - strand at 4474.195 kb on - strand at 4474.214 kb on + strand at 4474.216 kb on - strand at 4474.294 kb on - strand, within Shewana3_3733 at 4474.348 kb on + strand, within Shewana3_3733 at 4474.390 kb on + strand, within Shewana3_3733 at 4474.390 kb on - strand, within Shewana3_3733 at 4474.410 kb on - strand, within Shewana3_3733 at 4474.591 kb on + strand, within Shewana3_3733 at 4474.681 kb on + strand, within Shewana3_3733 at 4474.766 kb on - strand, within Shewana3_3733 at 4474.791 kb on + strand, within Shewana3_3733 at 4474.938 kb on - strand, within Shewana3_3733 at 4474.948 kb on - strand, within Shewana3_3733 at 4474.965 kb on + strand, within Shewana3_3733 at 4475.033 kb on + strand, within Shewana3_3733
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 4,472,257 - Shewana3_3730 0.46 -1.1 4,472,465 - Shewana3_3730 0.73 -1.6 4,472,547 + Shewana3_3730 0.84 -0.2 4,472,736 + +0.3 4,472,736 + -0.1 4,472,744 - -0.0 4,472,756 + +0.1 4,472,756 + -1.0 4,472,764 - Shewana3_3731 0.10 +1.0 4,472,892 + Shewana3_3731 0.34 +0.2 4,472,939 - Shewana3_3731 0.43 +0.9 4,472,959 - Shewana3_3731 0.47 +0.5 4,472,969 - Shewana3_3731 0.49 +0.3 4,473,208 + +0.6 4,473,215 + +0.9 4,473,465 + Shewana3_3732 0.28 +1.1 4,473,533 + Shewana3_3732 0.37 -1.8 4,473,583 - Shewana3_3732 0.43 +1.2 4,473,861 + Shewana3_3732 0.77 +0.5 4,473,870 - Shewana3_3732 0.78 +0.5 4,473,882 + Shewana3_3732 0.80 +0.0 4,474,126 + -0.2 4,474,177 - +0.1 4,474,195 - -0.9 4,474,214 + -0.2 4,474,216 - -0.9 4,474,294 - Shewana3_3733 0.14 +2.1 4,474,348 + Shewana3_3733 0.17 -0.4 4,474,390 + Shewana3_3733 0.19 -0.2 4,474,390 - Shewana3_3733 0.19 +0.4 4,474,410 - Shewana3_3733 0.20 +0.6 4,474,591 + Shewana3_3733 0.30 +0.1 4,474,681 + Shewana3_3733 0.34 +0.9 4,474,766 - Shewana3_3733 0.39 +0.6 4,474,791 + Shewana3_3733 0.40 +0.1 4,474,938 - Shewana3_3733 0.48 -0.3 4,474,948 - Shewana3_3733 0.49 +0.4 4,474,965 + Shewana3_3733 0.50 +1.0 4,475,033 + Shewana3_3733 0.53 +0.3
Or see this region's nucleotide sequence