Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3665 and Shewana3_3666 overlap by 4 nucleotides Shewana3_3666 and Shewana3_3667 overlap by 4 nucleotides Shewana3_3667 and Shewana3_3668 are separated by 238 nucleotides
Shewana3_3665: Shewana3_3665 - MSHA biogenesis protein MshJ (RefSeq), at 4,402,121 to 4,402,771
_3665
Shewana3_3666: Shewana3_3666 - fimbrial assembly family protein (RefSeq), at 4,402,768 to 4,403,370
_3666
Shewana3_3667: Shewana3_3667 - biogenesis protein MshI (RefSeq), at 4,403,367 to 4,404,245
_3667
Shewana3_3668: Shewana3_3668 - regulatory protein CsrD (RefSeq), at 4,404,484 to 4,406,394
_3668
Position (kb)
4403
4404
4405 Strain fitness (log2 ratio)
-1
0
1
2
3 at 4402.740 kb on - strand at 4402.825 kb on - strand at 4403.052 kb on + strand, within Shewana3_3666 at 4403.052 kb on + strand, within Shewana3_3666 at 4403.283 kb on + strand, within Shewana3_3666 at 4403.291 kb on - strand, within Shewana3_3666 at 4403.475 kb on - strand, within Shewana3_3667 at 4403.489 kb on + strand, within Shewana3_3667 at 4403.497 kb on - strand, within Shewana3_3667 at 4403.625 kb on - strand, within Shewana3_3667 at 4403.631 kb on - strand, within Shewana3_3667 at 4403.638 kb on + strand, within Shewana3_3667 at 4403.660 kb on + strand, within Shewana3_3667 at 4403.662 kb on + strand, within Shewana3_3667 at 4403.677 kb on + strand, within Shewana3_3667 at 4403.700 kb on + strand, within Shewana3_3667 at 4403.726 kb on - strand, within Shewana3_3667 at 4403.857 kb on + strand, within Shewana3_3667 at 4403.868 kb on - strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.949 kb on + strand, within Shewana3_3667 at 4403.957 kb on - strand, within Shewana3_3667 at 4403.957 kb on - strand, within Shewana3_3667 at 4404.109 kb on - strand, within Shewana3_3667 at 4404.129 kb on + strand, within Shewana3_3667 at 4404.151 kb on + strand, within Shewana3_3667 at 4404.173 kb on + strand at 4404.181 kb on - strand at 4404.181 kb on - strand at 4404.393 kb on - strand at 4404.592 kb on - strand at 4404.592 kb on - strand at 4404.695 kb on - strand, within Shewana3_3668 at 4404.755 kb on + strand, within Shewana3_3668 at 4404.785 kb on + strand, within Shewana3_3668 at 4404.792 kb on + strand, within Shewana3_3668 at 4404.792 kb on + strand, within Shewana3_3668 at 4404.797 kb on + strand, within Shewana3_3668 at 4404.805 kb on - strand, within Shewana3_3668 at 4404.900 kb on + strand, within Shewana3_3668 at 4404.908 kb on - strand, within Shewana3_3668 at 4405.116 kb on + strand, within Shewana3_3668
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 4,402,740 - +1.0 4,402,825 - -0.8 4,403,052 + Shewana3_3666 0.47 -0.1 4,403,052 + Shewana3_3666 0.47 -0.1 4,403,283 + Shewana3_3666 0.85 +0.8 4,403,291 - Shewana3_3666 0.87 -0.4 4,403,475 - Shewana3_3667 0.12 +1.0 4,403,489 + Shewana3_3667 0.14 +2.8 4,403,497 - Shewana3_3667 0.15 -0.4 4,403,625 - Shewana3_3667 0.29 +1.0 4,403,631 - Shewana3_3667 0.30 +0.3 4,403,638 + Shewana3_3667 0.31 +0.6 4,403,660 + Shewana3_3667 0.33 -0.3 4,403,662 + Shewana3_3667 0.34 +0.7 4,403,677 + Shewana3_3667 0.35 -1.2 4,403,700 + Shewana3_3667 0.38 +2.4 4,403,726 - Shewana3_3667 0.41 -0.0 4,403,857 + Shewana3_3667 0.56 -0.4 4,403,868 - Shewana3_3667 0.57 +0.8 4,403,949 + Shewana3_3667 0.66 +0.5 4,403,949 + Shewana3_3667 0.66 +0.9 4,403,949 + Shewana3_3667 0.66 +0.7 4,403,957 - Shewana3_3667 0.67 -0.2 4,403,957 - Shewana3_3667 0.67 +0.5 4,404,109 - Shewana3_3667 0.84 -0.3 4,404,129 + Shewana3_3667 0.87 +0.7 4,404,151 + Shewana3_3667 0.89 +0.1 4,404,173 + +0.3 4,404,181 - +0.5 4,404,181 - +1.5 4,404,393 - +0.4 4,404,592 - +0.4 4,404,592 - -0.0 4,404,695 - Shewana3_3668 0.11 -0.4 4,404,755 + Shewana3_3668 0.14 -1.1 4,404,785 + Shewana3_3668 0.16 -0.2 4,404,792 + Shewana3_3668 0.16 +0.3 4,404,792 + Shewana3_3668 0.16 +0.2 4,404,797 + Shewana3_3668 0.16 -0.7 4,404,805 - Shewana3_3668 0.17 -0.0 4,404,900 + Shewana3_3668 0.22 +0.0 4,404,908 - Shewana3_3668 0.22 +1.3 4,405,116 + Shewana3_3668 0.33 -1.0
Or see this region's nucleotide sequence