Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3107

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3106 and Shewana3_3107 are separated by 50 nucleotidesShewana3_3107 and Shewana3_3108 are separated by 23 nucleotidesShewana3_3108 and Shewana3_3109 are separated by 185 nucleotides Shewana3_3106: Shewana3_3106 - beta alanine--pyruvate transaminase (RefSeq), at 3,725,351 to 3,726,691 _3106 Shewana3_3107: Shewana3_3107 - methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq), at 3,726,742 to 3,728,232 _3107 Shewana3_3108: Shewana3_3108 - protein of unknown function DUF861, cupin_3 (RefSeq), at 3,728,256 to 3,728,615 _3108 Shewana3_3109: Shewana3_3109 - hypothetical protein (RefSeq), at 3,728,801 to 3,729,523 _3109 Position (kb) 3726 3727 3728 3729Strain fitness (log2 ratio) -2 -1 0 1at 3725.787 kb on + strand, within Shewana3_3106at 3725.797 kb on + strand, within Shewana3_3106at 3725.883 kb on + strand, within Shewana3_3106at 3725.912 kb on - strand, within Shewana3_3106at 3725.969 kb on + strand, within Shewana3_3106at 3725.970 kb on + strand, within Shewana3_3106at 3725.990 kb on + strand, within Shewana3_3106at 3725.990 kb on + strand, within Shewana3_3106at 3726.291 kb on + strand, within Shewana3_3106at 3726.318 kb on + strand, within Shewana3_3106at 3726.413 kb on - strand, within Shewana3_3106at 3726.413 kb on - strand, within Shewana3_3106at 3726.561 kb on + strandat 3726.561 kb on + strandat 3726.659 kb on + strandat 3726.996 kb on + strand, within Shewana3_3107at 3727.047 kb on - strand, within Shewana3_3107at 3727.252 kb on - strand, within Shewana3_3107at 3727.311 kb on + strand, within Shewana3_3107at 3727.364 kb on + strand, within Shewana3_3107at 3727.437 kb on + strand, within Shewana3_3107at 3727.555 kb on + strand, within Shewana3_3107at 3727.563 kb on - strand, within Shewana3_3107at 3727.573 kb on - strand, within Shewana3_3107at 3727.851 kb on + strand, within Shewana3_3107at 3727.900 kb on - strand, within Shewana3_3107at 3727.929 kb on - strand, within Shewana3_3107at 3727.931 kb on + strand, within Shewana3_3107at 3728.018 kb on + strand, within Shewana3_3107at 3728.023 kb on + strand, within Shewana3_3107at 3728.029 kb on - strand, within Shewana3_3107at 3728.037 kb on + strand, within Shewana3_3107at 3728.042 kb on + strand, within Shewana3_3107at 3728.137 kb on - strandat 3728.196 kb on + strandat 3728.379 kb on - strand, within Shewana3_3108at 3728.504 kb on + strand, within Shewana3_3108at 3728.512 kb on - strand, within Shewana3_3108at 3728.557 kb on - strand, within Shewana3_3108at 3729.080 kb on - strand, within Shewana3_3109at 3729.086 kb on - strand, within Shewana3_3109at 3729.212 kb on + strand, within Shewana3_3109

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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3,725,787 + Shewana3_3106 0.33 +0.2
3,725,797 + Shewana3_3106 0.33 +1.0
3,725,883 + Shewana3_3106 0.40 -1.1
3,725,912 - Shewana3_3106 0.42 -1.7
3,725,969 + Shewana3_3106 0.46 -0.7
3,725,970 + Shewana3_3106 0.46 -1.0
3,725,990 + Shewana3_3106 0.48 -0.8
3,725,990 + Shewana3_3106 0.48 +0.1
3,726,291 + Shewana3_3106 0.70 +0.9
3,726,318 + Shewana3_3106 0.72 -0.1
3,726,413 - Shewana3_3106 0.79 -0.8
3,726,413 - Shewana3_3106 0.79 +0.1
3,726,561 + -0.1
3,726,561 + -1.9
3,726,659 + +0.1
3,726,996 + Shewana3_3107 0.17 -1.4
3,727,047 - Shewana3_3107 0.20 +0.4
3,727,252 - Shewana3_3107 0.34 -0.1
3,727,311 + Shewana3_3107 0.38 +1.1
3,727,364 + Shewana3_3107 0.42 -0.1
3,727,437 + Shewana3_3107 0.47 -0.5
3,727,555 + Shewana3_3107 0.55 -0.7
3,727,563 - Shewana3_3107 0.55 -0.2
3,727,573 - Shewana3_3107 0.56 -0.7
3,727,851 + Shewana3_3107 0.74 -0.4
3,727,900 - Shewana3_3107 0.78 -0.8
3,727,929 - Shewana3_3107 0.80 -0.6
3,727,931 + Shewana3_3107 0.80 +0.6
3,728,018 + Shewana3_3107 0.86 +0.2
3,728,023 + Shewana3_3107 0.86 +0.4
3,728,029 - Shewana3_3107 0.86 -0.4
3,728,037 + Shewana3_3107 0.87 +0.1
3,728,042 + Shewana3_3107 0.87 +0.8
3,728,137 - +0.4
3,728,196 + +0.4
3,728,379 - Shewana3_3108 0.34 +0.4
3,728,504 + Shewana3_3108 0.69 +0.7
3,728,512 - Shewana3_3108 0.71 -0.3
3,728,557 - Shewana3_3108 0.84 +0.3
3,729,080 - Shewana3_3109 0.39 -1.4
3,729,086 - Shewana3_3109 0.39 -1.9
3,729,212 + Shewana3_3109 0.57 -0.7

Or see this region's nucleotide sequence