Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3101 and Shewana3_3102 are separated by 44 nucleotides Shewana3_3102 and Shewana3_3103 are separated by 85 nucleotides Shewana3_3103 and Shewana3_3104 are separated by 145 nucleotides Shewana3_3104 and Shewana3_3105 are separated by 165 nucleotides
Shewana3_3101: Shewana3_3101 - FAD dependent oxidoreductase (RefSeq), at 3,720,060 to 3,721,367
_3101
Shewana3_3102: Shewana3_3102 - hypothetical protein (RefSeq), at 3,721,412 to 3,721,924
_3102
Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867
_3103
Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408
_3104
Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070
_3105
Position (kb)
3722
3723 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3721.180 kb on + strand, within Shewana3_3101 at 3721.183 kb on - strand, within Shewana3_3101 at 3721.361 kb on + strand at 3721.406 kb on - strand at 3721.459 kb on + strand at 3721.546 kb on + strand, within Shewana3_3102 at 3721.590 kb on + strand, within Shewana3_3102 at 3721.707 kb on + strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.823 kb on - strand, within Shewana3_3102 at 3721.942 kb on + strand at 3721.948 kb on + strand at 3722.274 kb on - strand, within Shewana3_3103 at 3722.284 kb on - strand, within Shewana3_3103 at 3722.484 kb on + strand, within Shewana3_3103 at 3722.492 kb on - strand, within Shewana3_3103 at 3722.644 kb on + strand, within Shewana3_3103 at 3722.662 kb on - strand, within Shewana3_3103 at 3722.747 kb on + strand, within Shewana3_3103 at 3722.786 kb on - strand at 3722.830 kb on + strand at 3722.848 kb on - strand at 3722.949 kb on + strand at 3723.072 kb on + strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.473 kb on + strand at 3723.491 kb on - strand at 3723.772 kb on - strand, within Shewana3_3105 at 3723.854 kb on + strand, within Shewana3_3105
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,721,180 + Shewana3_3101 0.86 +0.3 3,721,183 - Shewana3_3101 0.86 +0.4 3,721,361 + -1.2 3,721,406 - +0.2 3,721,459 + -0.1 3,721,546 + Shewana3_3102 0.26 +0.7 3,721,590 + Shewana3_3102 0.35 +0.6 3,721,707 + Shewana3_3102 0.58 -1.8 3,721,823 - Shewana3_3102 0.80 +0.5 3,721,823 - Shewana3_3102 0.80 +0.2 3,721,942 + +1.0 3,721,948 + +0.5 3,722,274 - Shewana3_3103 0.31 -1.7 3,722,284 - Shewana3_3103 0.32 +0.3 3,722,484 + Shewana3_3103 0.55 +0.6 3,722,492 - Shewana3_3103 0.56 +0.9 3,722,644 + Shewana3_3103 0.74 -0.9 3,722,662 - Shewana3_3103 0.76 -1.3 3,722,747 + Shewana3_3103 0.86 -0.2 3,722,786 - +0.7 3,722,830 + -1.5 3,722,848 - +0.4 3,722,949 + +1.7 3,723,072 + Shewana3_3104 0.15 +0.0 3,723,145 - Shewana3_3104 0.33 +0.0 3,723,145 - Shewana3_3104 0.33 +0.5 3,723,473 + -3.2 3,723,491 - +0.7 3,723,772 - Shewana3_3105 0.13 -0.8 3,723,854 + Shewana3_3105 0.19 -0.2
Or see this region's nucleotide sequence