Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2892 and Shewana3_2893 are separated by 87 nucleotides Shewana3_2893 and Shewana3_2894 overlap by 20 nucleotides Shewana3_2894 and Shewana3_2895 are separated by 176 nucleotides Shewana3_2895 and Shewana3_2896 are separated by 151 nucleotides
Shewana3_2892: Shewana3_2892 - hypothetical protein (RefSeq), at 3,462,543 to 3,462,935
_2892
Shewana3_2893: Shewana3_2893 - hypothetical protein (RefSeq), at 3,463,023 to 3,463,694
_2893
Shewana3_2894: Shewana3_2894 - DNA-binding transcriptional activator GcvA (RefSeq), at 3,463,675 to 3,464,586
_2894
Shewana3_2895: Shewana3_2895 - hypothetical protein (RefSeq), at 3,464,763 to 3,464,996
_2895
Shewana3_2896: Shewana3_2896 - thiamine biosynthesis protein ThiI (RefSeq), at 3,465,148 to 3,466,602
_2896
Position (kb)
3463
3464
3465 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3462.681 kb on - strand, within Shewana3_2892 at 3463.005 kb on - strand at 3463.188 kb on - strand, within Shewana3_2893 at 3463.379 kb on - strand, within Shewana3_2893 at 3463.390 kb on + strand, within Shewana3_2893 at 3463.392 kb on - strand, within Shewana3_2893 at 3463.392 kb on - strand, within Shewana3_2893 at 3463.392 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.398 kb on - strand, within Shewana3_2893 at 3463.406 kb on + strand, within Shewana3_2893 at 3463.414 kb on - strand, within Shewana3_2893 at 3463.461 kb on - strand, within Shewana3_2893 at 3463.513 kb on - strand, within Shewana3_2893 at 3464.801 kb on - strand, within Shewana3_2895 at 3464.884 kb on + strand, within Shewana3_2895 at 3464.884 kb on + strand, within Shewana3_2895 at 3464.940 kb on + strand, within Shewana3_2895 at 3465.070 kb on - strand at 3465.200 kb on - strand at 3465.238 kb on - strand at 3465.342 kb on - strand, within Shewana3_2896 at 3465.387 kb on - strand, within Shewana3_2896 at 3465.518 kb on + strand, within Shewana3_2896 at 3465.526 kb on - strand, within Shewana3_2896
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,462,681 - Shewana3_2892 0.35 +0.0 3,463,005 - -0.7 3,463,188 - Shewana3_2893 0.25 -0.2 3,463,379 - Shewana3_2893 0.53 +0.0 3,463,390 + Shewana3_2893 0.55 +1.0 3,463,392 - Shewana3_2893 0.55 -1.8 3,463,392 - Shewana3_2893 0.55 +0.2 3,463,392 - Shewana3_2893 0.55 +0.1 3,463,398 - Shewana3_2893 0.56 -0.1 3,463,398 - Shewana3_2893 0.56 -0.2 3,463,398 - Shewana3_2893 0.56 +0.5 3,463,398 - Shewana3_2893 0.56 -0.7 3,463,398 - Shewana3_2893 0.56 +0.5 3,463,406 + Shewana3_2893 0.57 +0.5 3,463,414 - Shewana3_2893 0.58 -2.1 3,463,461 - Shewana3_2893 0.65 +0.0 3,463,513 - Shewana3_2893 0.73 -0.8 3,464,801 - Shewana3_2895 0.16 -0.2 3,464,884 + Shewana3_2895 0.52 -0.4 3,464,884 + Shewana3_2895 0.52 -1.1 3,464,940 + Shewana3_2895 0.76 +0.0 3,465,070 - -1.7 3,465,200 - -2.9 3,465,238 - -1.5 3,465,342 - Shewana3_2896 0.13 -3.9 3,465,387 - Shewana3_2896 0.16 -4.0 3,465,518 + Shewana3_2896 0.25 -0.3 3,465,526 - Shewana3_2896 0.26 -2.4
Or see this region's nucleotide sequence