Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2632 and Shewana3_2633 are separated by 9 nucleotides Shewana3_2633 and Shewana3_2634 are separated by 5 nucleotides Shewana3_2634 and Shewana3_2635 are separated by 33 nucleotides
Shewana3_2632: Shewana3_2632 - primosomal replication protein N'', putative (RefSeq), at 3,141,721 to 3,142,389
_2632
Shewana3_2633: Shewana3_2633 - hypothetical protein (RefSeq), at 3,142,399 to 3,143,091
_2633
Shewana3_2634: Shewana3_2634 - histone deacetylase superfamily protein (RefSeq), at 3,143,097 to 3,143,999
_2634
Shewana3_2635: Shewana3_2635 - hypothetical protein (RefSeq), at 3,144,033 to 3,144,320
_2635
Position (kb)
3143
3144 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3142.100 kb on - strand, within Shewana3_2632 at 3142.455 kb on - strand at 3142.465 kb on + strand at 3142.712 kb on - strand, within Shewana3_2633 at 3142.730 kb on - strand, within Shewana3_2633 at 3142.758 kb on + strand, within Shewana3_2633 at 3142.761 kb on - strand, within Shewana3_2633 at 3142.761 kb on - strand, within Shewana3_2633 at 3142.776 kb on - strand, within Shewana3_2633 at 3142.861 kb on + strand, within Shewana3_2633 at 3142.871 kb on - strand, within Shewana3_2633 at 3142.931 kb on + strand, within Shewana3_2633 at 3142.983 kb on + strand, within Shewana3_2633 at 3142.983 kb on + strand, within Shewana3_2633 at 3142.991 kb on - strand, within Shewana3_2633 at 3143.098 kb on - strand at 3143.151 kb on - strand at 3143.330 kb on - strand, within Shewana3_2634 at 3143.438 kb on - strand, within Shewana3_2634 at 3143.596 kb on + strand, within Shewana3_2634 at 3143.610 kb on + strand, within Shewana3_2634 at 3143.938 kb on - strand at 3143.994 kb on - strand at 3144.134 kb on + strand, within Shewana3_2635 at 3144.276 kb on - strand, within Shewana3_2635 at 3144.310 kb on - strand at 3144.329 kb on + strand at 3144.360 kb on + strand at 3144.583 kb on - strand at 3144.661 kb on + strand at 3144.678 kb on - strand at 3144.911 kb on + strand at 3144.916 kb on + strand at 3144.924 kb on - strand at 3144.924 kb on - strand at 3144.928 kb on + strand at 3144.935 kb on + strand at 3144.958 kb on + strand at 3144.959 kb on - strand at 3144.966 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 3,142,100 - Shewana3_2632 0.57 -0.6 3,142,455 - +0.0 3,142,465 + +0.2 3,142,712 - Shewana3_2633 0.45 -2.4 3,142,730 - Shewana3_2633 0.48 -0.1 3,142,758 + Shewana3_2633 0.52 +0.3 3,142,761 - Shewana3_2633 0.52 +0.8 3,142,761 - Shewana3_2633 0.52 -1.7 3,142,776 - Shewana3_2633 0.54 +0.9 3,142,861 + Shewana3_2633 0.67 -0.4 3,142,871 - Shewana3_2633 0.68 -0.2 3,142,931 + Shewana3_2633 0.77 -1.5 3,142,983 + Shewana3_2633 0.84 +2.3 3,142,983 + Shewana3_2633 0.84 +0.8 3,142,991 - Shewana3_2633 0.85 -0.9 3,143,098 - +1.5 3,143,151 - -0.8 3,143,330 - Shewana3_2634 0.26 -0.3 3,143,438 - Shewana3_2634 0.38 -1.0 3,143,596 + Shewana3_2634 0.55 -0.9 3,143,610 + Shewana3_2634 0.57 -1.5 3,143,938 - -0.4 3,143,994 - -0.2 3,144,134 + Shewana3_2635 0.35 +0.2 3,144,276 - Shewana3_2635 0.84 +0.2 3,144,310 - -0.5 3,144,329 + -0.2 3,144,360 + +1.3 3,144,583 - +1.8 3,144,661 + -0.6 3,144,678 - +0.2 3,144,911 + +0.8 3,144,916 + -1.3 3,144,924 - -0.4 3,144,924 - -0.3 3,144,928 + +1.2 3,144,935 + -1.7 3,144,958 + +0.4 3,144,959 - +0.3 3,144,966 - -0.2
Or see this region's nucleotide sequence