Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2242 and Shewana3_2243 are separated by 50 nucleotides Shewana3_2243 and Shewana3_2244 overlap by 4 nucleotides
Shewana3_2242: Shewana3_2242 - ATPase (RefSeq), at 2,695,929 to 2,696,870
_2242
Shewana3_2243: Shewana3_2243 - hypothetical protein (RefSeq), at 2,696,921 to 2,698,006
_2243
Shewana3_2244: Shewana3_2244 - transglutaminase domain-containing protein (RefSeq), at 2,698,003 to 2,700,150
_2244
Position (kb)
2696
2697
2698
2699 Strain fitness (log2 ratio)
-2
-1
0
1 at 2696.094 kb on + strand, within Shewana3_2242 at 2696.124 kb on - strand, within Shewana3_2242 at 2696.124 kb on - strand, within Shewana3_2242 at 2696.296 kb on - strand, within Shewana3_2242 at 2696.556 kb on - strand, within Shewana3_2242 at 2696.625 kb on + strand, within Shewana3_2242 at 2696.653 kb on + strand, within Shewana3_2242 at 2696.707 kb on + strand, within Shewana3_2242 at 2696.707 kb on - strand, within Shewana3_2242 at 2696.979 kb on + strand at 2696.987 kb on - strand at 2697.017 kb on - strand at 2697.040 kb on - strand, within Shewana3_2243 at 2697.048 kb on + strand, within Shewana3_2243 at 2697.070 kb on + strand, within Shewana3_2243 at 2697.233 kb on + strand, within Shewana3_2243 at 2697.629 kb on + strand, within Shewana3_2243 at 2697.667 kb on + strand, within Shewana3_2243 at 2697.667 kb on + strand, within Shewana3_2243 at 2697.667 kb on + strand, within Shewana3_2243 at 2697.866 kb on - strand, within Shewana3_2243 at 2698.022 kb on - strand at 2698.022 kb on - strand at 2698.040 kb on - strand at 2698.174 kb on + strand at 2698.460 kb on - strand, within Shewana3_2244 at 2698.460 kb on - strand, within Shewana3_2244 at 2698.709 kb on + strand, within Shewana3_2244 at 2698.775 kb on - strand, within Shewana3_2244 at 2698.775 kb on - strand, within Shewana3_2244 at 2698.922 kb on + strand, within Shewana3_2244 at 2698.930 kb on - strand, within Shewana3_2244
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,696,094 + Shewana3_2242 0.18 -1.0 2,696,124 - Shewana3_2242 0.21 +0.3 2,696,124 - Shewana3_2242 0.21 -0.8 2,696,296 - Shewana3_2242 0.39 -1.2 2,696,556 - Shewana3_2242 0.67 +0.5 2,696,625 + Shewana3_2242 0.74 -0.7 2,696,653 + Shewana3_2242 0.77 -0.9 2,696,707 + Shewana3_2242 0.83 -0.3 2,696,707 - Shewana3_2242 0.83 +1.1 2,696,979 + -0.0 2,696,987 - -0.5 2,697,017 - +0.4 2,697,040 - Shewana3_2243 0.11 -0.1 2,697,048 + Shewana3_2243 0.12 -0.9 2,697,070 + Shewana3_2243 0.14 -0.4 2,697,233 + Shewana3_2243 0.29 -1.9 2,697,629 + Shewana3_2243 0.65 -1.1 2,697,667 + Shewana3_2243 0.69 -0.2 2,697,667 + Shewana3_2243 0.69 -1.1 2,697,667 + Shewana3_2243 0.69 +0.2 2,697,866 - Shewana3_2243 0.87 +0.1 2,698,022 - -0.8 2,698,022 - +0.6 2,698,040 - -1.9 2,698,174 + +1.0 2,698,460 - Shewana3_2244 0.21 +0.2 2,698,460 - Shewana3_2244 0.21 +0.8 2,698,709 + Shewana3_2244 0.33 +0.1 2,698,775 - Shewana3_2244 0.36 -0.5 2,698,775 - Shewana3_2244 0.36 +1.2 2,698,922 + Shewana3_2244 0.43 -0.1 2,698,930 - Shewana3_2244 0.43 +0.4
Or see this region's nucleotide sequence