Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1257 and Shewana3_1258 overlap by 4 nucleotides Shewana3_1258 and Shewana3_1259 are separated by 285 nucleotides Shewana3_1259 and Shewana3_1260 are separated by 62 nucleotides Shewana3_1260 and Shewana3_1261 are separated by 5 nucleotides Shewana3_1261 and Shewana3_1262 are separated by 83 nucleotides
Shewana3_1257: Shewana3_1257 - patatin (RefSeq), at 1,474,143 to 1,475,105
_1257
Shewana3_1258: Shewana3_1258 - XRE family transcriptional regulator (RefSeq), at 1,475,102 to 1,475,392
_1258
Shewana3_1259: Shewana3_1259 - putative lipoprotein (RefSeq), at 1,475,678 to 1,476,007
_1259
Shewana3_1260: Shewana3_1260 - no description, at 1,476,070 to 1,476,324
_1260
Shewana3_1261: Shewana3_1261 - hypothetical protein (RefSeq), at 1,476,330 to 1,477,127
_1261
Shewana3_1262: Shewana3_1262 - hypothetical protein (RefSeq), at 1,477,211 to 1,477,495
_1262
Position (kb)
1476
1477 Strain fitness (log2 ratio)
-1
0
1 at 1475.166 kb on + strand, within Shewana3_1258 at 1475.182 kb on + strand, within Shewana3_1258 at 1475.187 kb on + strand, within Shewana3_1258 at 1475.187 kb on + strand, within Shewana3_1258 at 1475.187 kb on + strand, within Shewana3_1258 at 1475.195 kb on - strand, within Shewana3_1258 at 1475.195 kb on - strand, within Shewana3_1258 at 1475.229 kb on + strand, within Shewana3_1258 at 1475.257 kb on + strand, within Shewana3_1258 at 1475.576 kb on + strand at 1475.648 kb on + strand at 1475.682 kb on + strand at 1475.741 kb on - strand, within Shewana3_1259 at 1475.789 kb on - strand, within Shewana3_1259 at 1475.853 kb on - strand, within Shewana3_1259 at 1476.104 kb on - strand, within Shewana3_1260 at 1476.208 kb on + strand, within Shewana3_1260 at 1476.287 kb on + strand, within Shewana3_1260 at 1476.545 kb on - strand, within Shewana3_1261 at 1476.755 kb on + strand, within Shewana3_1261 at 1476.787 kb on + strand, within Shewana3_1261 at 1476.859 kb on - strand, within Shewana3_1261 at 1476.915 kb on + strand, within Shewana3_1261 at 1477.154 kb on + strand at 1477.302 kb on + strand, within Shewana3_1262 at 1477.310 kb on - strand, within Shewana3_1262
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 1,475,166 + Shewana3_1258 0.22 +0.1 1,475,182 + Shewana3_1258 0.27 -0.2 1,475,187 + Shewana3_1258 0.29 -0.8 1,475,187 + Shewana3_1258 0.29 +1.1 1,475,187 + Shewana3_1258 0.29 +0.9 1,475,195 - Shewana3_1258 0.32 +0.5 1,475,195 - Shewana3_1258 0.32 -1.2 1,475,229 + Shewana3_1258 0.44 -0.9 1,475,257 + Shewana3_1258 0.53 +0.5 1,475,576 + +0.2 1,475,648 + +0.2 1,475,682 + +0.3 1,475,741 - Shewana3_1259 0.19 -0.5 1,475,789 - Shewana3_1259 0.34 +1.1 1,475,853 - Shewana3_1259 0.53 +0.7 1,476,104 - Shewana3_1260 0.13 +0.9 1,476,208 + Shewana3_1260 0.54 +0.7 1,476,287 + Shewana3_1260 0.85 +0.5 1,476,545 - Shewana3_1261 0.27 +0.4 1,476,755 + Shewana3_1261 0.53 -0.7 1,476,787 + Shewana3_1261 0.57 +0.9 1,476,859 - Shewana3_1261 0.66 -0.0 1,476,915 + Shewana3_1261 0.73 +0.5 1,477,154 + -1.1 1,477,302 + Shewana3_1262 0.32 -1.4 1,477,310 - Shewana3_1262 0.35 -1.0
Or see this region's nucleotide sequence