Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0747 and Shewana3_0748 are separated by 114 nucleotides Shewana3_0748 and Shewana3_0749 are separated by 24 nucleotides Shewana3_0749 and Shewana3_0750 are separated by 66 nucleotides
Shewana3_0747: Shewana3_0747 - diguanylate cyclase (RefSeq), at 866,449 to 868,389
_0747
Shewana3_0748: Shewana3_0748 - phosphoesterase, PA-phosphatase related (RefSeq), at 868,504 to 869,031
_0748
Shewana3_0749: Shewana3_0749 - hypothetical protein (RefSeq), at 869,056 to 869,490
_0749
Shewana3_0750: Shewana3_0750 - malate dehydrogenase (RefSeq), at 869,557 to 871,245
_0750
Position (kb) 869
870 Strain fitness (log2 ratio) -2
-1
0
1
2 at 868.152 kb on + strand, within Shewana3_0747 at 868.160 kb on - strand, within Shewana3_0747 at 868.230 kb on - strand at 868.325 kb on + strand at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.627 kb on + strand, within Shewana3_0748 at 868.689 kb on - strand, within Shewana3_0748 at 868.707 kb on + strand, within Shewana3_0748 at 868.792 kb on - strand, within Shewana3_0748 at 868.956 kb on + strand, within Shewana3_0748 at 868.981 kb on + strand at 869.079 kb on - strand at 869.162 kb on - strand, within Shewana3_0749 at 869.395 kb on + strand, within Shewana3_0749 at 869.473 kb on - strand at 869.484 kb on + strand at 869.642 kb on + strand at 869.661 kb on - strand at 869.843 kb on - strand, within Shewana3_0750 at 869.844 kb on - strand, within Shewana3_0750 at 869.844 kb on - strand, within Shewana3_0750 at 869.929 kb on - strand, within Shewana3_0750 at 870.281 kb on + strand, within Shewana3_0750
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 868,152 + Shewana3_0747 0.88 +0.6 868,160 - Shewana3_0747 0.88 +0.3 868,230 - -2.4 868,325 + -0.2 868,627 + Shewana3_0748 0.23 +1.2 868,627 + Shewana3_0748 0.23 -1.6 868,627 + Shewana3_0748 0.23 +0.5 868,689 - Shewana3_0748 0.35 +1.0 868,707 + Shewana3_0748 0.38 -1.0 868,792 - Shewana3_0748 0.55 +1.1 868,956 + Shewana3_0748 0.86 -2.1 868,981 + -0.2 869,079 - -0.0 869,162 - Shewana3_0749 0.24 -1.9 869,395 + Shewana3_0749 0.78 +1.9 869,473 - +0.4 869,484 + +0.0 869,642 + -1.7 869,661 - -1.4 869,843 - Shewana3_0750 0.17 -1.7 869,844 - Shewana3_0750 0.17 -2.7 869,844 - Shewana3_0750 0.17 -1.6 869,929 - Shewana3_0750 0.22 -1.5 870,281 + Shewana3_0750 0.43 -0.6
Or see this region's nucleotide sequence