Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0728 and Shewana3_0729 are separated by 26 nucleotides Shewana3_0729 and Shewana3_0730 are separated by 56 nucleotides Shewana3_0730 and Shewana3_0731 are separated by 52 nucleotides
Shewana3_0728: Shewana3_0728 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 844,152 to 844,991
_0728
Shewana3_0729: Shewana3_0729 - hypothetical protein (RefSeq), at 845,018 to 845,593
_0729
Shewana3_0730: Shewana3_0730 - DNA topoisomerase IV subunit B (RefSeq), at 845,650 to 847,536
_0730
Shewana3_0731: Shewana3_0731 - L-sorbosone dehydrogenase, putative (RefSeq), at 847,589 to 848,764
_0731
Position (kb) 845
846
847
848 Strain fitness (log2 ratio) -2
-1
0
1 at 844.685 kb on - strand, within Shewana3_0728 at 844.744 kb on - strand, within Shewana3_0728 at 844.749 kb on + strand, within Shewana3_0728 at 844.751 kb on - strand, within Shewana3_0728 at 844.756 kb on - strand, within Shewana3_0728 at 844.927 kb on + strand at 845.023 kb on + strand at 845.083 kb on + strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.091 kb on - strand, within Shewana3_0729 at 845.276 kb on + strand, within Shewana3_0729 at 845.301 kb on + strand, within Shewana3_0729 at 845.320 kb on + strand, within Shewana3_0729 at 845.341 kb on + strand, within Shewana3_0729 at 845.470 kb on - strand, within Shewana3_0729 at 845.490 kb on + strand, within Shewana3_0729 at 847.530 kb on + strand at 847.531 kb on + strand at 847.974 kb on + strand, within Shewana3_0731 at 848.359 kb on + strand, within Shewana3_0731
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 844,685 - Shewana3_0728 0.63 -0.8 844,744 - Shewana3_0728 0.70 -1.4 844,749 + Shewana3_0728 0.71 -0.8 844,751 - Shewana3_0728 0.71 -1.9 844,756 - Shewana3_0728 0.72 -2.5 844,927 + -1.5 845,023 + +0.9 845,083 + Shewana3_0729 0.11 +1.3 845,091 - Shewana3_0729 0.13 -0.3 845,091 - Shewana3_0729 0.13 +0.9 845,276 + Shewana3_0729 0.45 -1.2 845,301 + Shewana3_0729 0.49 -0.3 845,320 + Shewana3_0729 0.52 +0.6 845,341 + Shewana3_0729 0.56 +0.0 845,470 - Shewana3_0729 0.78 +0.3 845,490 + Shewana3_0729 0.82 +0.6 847,530 + -1.7 847,531 + +0.4 847,974 + Shewana3_0731 0.33 +1.4 848,359 + Shewana3_0731 0.65 +0.9
Or see this region's nucleotide sequence