Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0562 and Shewana3_0563 are separated by 80 nucleotides Shewana3_0563 and Shewana3_0564 are separated by 255 nucleotides Shewana3_0564 and Shewana3_0565 are separated by 81 nucleotides Shewana3_0565 and Shewana3_0566 overlap by 17 nucleotides Shewana3_0566 and Shewana3_0567 are separated by 4 nucleotides
Shewana3_0562: Shewana3_0562 - hypothetical protein (RefSeq), at 656,857 to 657,186
_0562
Shewana3_0563: Shewana3_0563 - hypothetical protein (RefSeq), at 657,267 to 657,392
_0563
Shewana3_0564: Shewana3_0564 - hypothetical protein (RefSeq), at 657,648 to 657,938
_0564
Shewana3_0565: Shewana3_0565 - hypothetical protein (RefSeq), at 658,020 to 659,201
_0565
Shewana3_0566: Shewana3_0566 - periplasmic solute binding protein (RefSeq), at 659,185 to 660,093
_0566
Shewana3_0567: Shewana3_0567 - ABC-3 protein (RefSeq), at 660,098 to 660,865
_0567
Position (kb) 658
659
660 Strain fitness (log2 ratio) -1
0
1 at 657.033 kb on - strand, within Shewana3_0562 at 657.227 kb on - strand at 657.254 kb on + strand at 657.254 kb on + strand at 657.262 kb on - strand at 657.262 kb on - strand at 657.398 kb on - strand at 657.418 kb on - strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.437 kb on + strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.445 kb on - strand at 657.447 kb on + strand at 657.615 kb on - strand at 657.642 kb on + strand at 657.777 kb on - strand, within Shewana3_0564 at 657.896 kb on + strand, within Shewana3_0564 at 657.896 kb on + strand, within Shewana3_0564 at 657.904 kb on - strand, within Shewana3_0564 at 657.909 kb on - strand, within Shewana3_0564 at 658.123 kb on + strand at 658.136 kb on - strand at 658.183 kb on + strand, within Shewana3_0565 at 658.265 kb on + strand, within Shewana3_0565 at 658.426 kb on - strand, within Shewana3_0565 at 658.499 kb on + strand, within Shewana3_0565 at 658.499 kb on + strand, within Shewana3_0565 at 658.531 kb on - strand, within Shewana3_0565 at 658.531 kb on - strand, within Shewana3_0565 at 658.571 kb on + strand, within Shewana3_0565 at 658.631 kb on - strand, within Shewana3_0565 at 658.772 kb on - strand, within Shewana3_0565 at 658.831 kb on + strand, within Shewana3_0565 at 658.850 kb on + strand, within Shewana3_0565 at 658.850 kb on + strand, within Shewana3_0565 at 658.858 kb on - strand, within Shewana3_0565 at 658.858 kb on - strand, within Shewana3_0565 at 658.939 kb on + strand, within Shewana3_0565 at 659.004 kb on - strand, within Shewana3_0565 at 659.011 kb on - strand, within Shewana3_0565 at 659.041 kb on + strand, within Shewana3_0565 at 659.162 kb on + strand at 659.162 kb on - strand at 659.562 kb on - strand, within Shewana3_0566 at 659.656 kb on - strand, within Shewana3_0566 at 659.656 kb on - strand, within Shewana3_0566 at 659.762 kb on - strand, within Shewana3_0566 at 660.052 kb on + strand at 660.052 kb on + strand at 660.052 kb on + strand at 660.060 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 657,033 - Shewana3_0562 0.53 -0.6 657,227 - +1.0 657,254 + +0.4 657,254 + -1.7 657,262 - -0.1 657,262 - -0.1 657,398 - -0.7 657,418 - -1.2 657,437 + -1.2 657,437 + +0.1 657,437 + +0.1 657,445 - +0.8 657,445 - +1.1 657,445 - +0.2 657,447 + +0.0 657,615 - -0.5 657,642 + +0.3 657,777 - Shewana3_0564 0.44 +0.1 657,896 + Shewana3_0564 0.85 -0.2 657,896 + Shewana3_0564 0.85 -0.7 657,904 - Shewana3_0564 0.88 -0.9 657,909 - Shewana3_0564 0.90 +0.6 658,123 + +0.6 658,136 - +0.3 658,183 + Shewana3_0565 0.14 -0.6 658,265 + Shewana3_0565 0.21 +0.2 658,426 - Shewana3_0565 0.34 -1.0 658,499 + Shewana3_0565 0.41 +0.1 658,499 + Shewana3_0565 0.41 +0.7 658,531 - Shewana3_0565 0.43 +0.1 658,531 - Shewana3_0565 0.43 +0.5 658,571 + Shewana3_0565 0.47 +0.4 658,631 - Shewana3_0565 0.52 -0.4 658,772 - Shewana3_0565 0.64 -1.4 658,831 + Shewana3_0565 0.69 +0.5 658,850 + Shewana3_0565 0.70 +0.1 658,850 + Shewana3_0565 0.70 -0.5 658,858 - Shewana3_0565 0.71 +0.3 658,858 - Shewana3_0565 0.71 -0.0 658,939 + Shewana3_0565 0.78 -1.2 659,004 - Shewana3_0565 0.83 +1.6 659,011 - Shewana3_0565 0.84 +0.5 659,041 + Shewana3_0565 0.86 +0.1 659,162 + -0.6 659,162 - -1.1 659,562 - Shewana3_0566 0.41 +0.8 659,656 - Shewana3_0566 0.52 +0.1 659,656 - Shewana3_0566 0.52 +0.4 659,762 - Shewana3_0566 0.63 +0.6 660,052 + -0.0 660,052 + +0.1 660,052 + +0.5 660,060 - +0.9
Or see this region's nucleotide sequence