Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0507

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0506 and Shewana3_0507 are separated by 158 nucleotidesShewana3_0507 and Shewana3_0508 are separated by 91 nucleotides Shewana3_0506: Shewana3_0506 - 3-octaprenyl-4hydroxybenzoate decarboxylase (RefSeq), at 597,225 to 598,706 _0506 Shewana3_0507: Shewana3_0507 - hypothetical protein (RefSeq), at 598,865 to 599,635 _0507 Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944 _0508 Position (kb) 598 599 600Strain fitness (log2 ratio) -2 -1 0 1at 598.768 kb on + strandat 598.816 kb on + strandat 599.000 kb on - strand, within Shewana3_0507at 599.287 kb on - strand, within Shewana3_0507at 599.290 kb on + strand, within Shewana3_0507at 599.305 kb on - strand, within Shewana3_0507at 599.387 kb on - strand, within Shewana3_0507at 599.640 kb on + strandat 599.648 kb on - strandat 599.760 kb on + strandat 599.768 kb on - strandat 599.768 kb on - strandat 599.768 kb on - strandat 599.806 kb on + strandat 599.814 kb on - strandat 599.814 kb on - strandat 599.916 kb on - strand, within Shewana3_0508at 599.970 kb on - strand, within Shewana3_0508at 600.148 kb on - strand, within Shewana3_0508at 600.254 kb on - strand, within Shewana3_0508at 600.423 kb on + strand, within Shewana3_0508at 600.423 kb on + strand, within Shewana3_0508at 600.457 kb on - strand, within Shewana3_0508at 600.526 kb on + strand, within Shewana3_0508at 600.534 kb on - strand, within Shewana3_0508at 600.561 kb on - strand, within Shewana3_0508at 600.595 kb on + strand, within Shewana3_0508

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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598,768 + +0.3
598,816 + -1.0
599,000 - Shewana3_0507 0.18 +0.3
599,287 - Shewana3_0507 0.55 -2.2
599,290 + Shewana3_0507 0.55 -1.4
599,305 - Shewana3_0507 0.57 -1.0
599,387 - Shewana3_0507 0.68 -1.1
599,640 + -0.7
599,648 - +0.1
599,760 + +0.1
599,768 - +0.2
599,768 - +1.3
599,768 - +0.3
599,806 + -0.5
599,814 - -1.7
599,814 - -1.2
599,916 - Shewana3_0508 0.16 -0.5
599,970 - Shewana3_0508 0.20 -0.1
600,148 - Shewana3_0508 0.35 +0.0
600,254 - Shewana3_0508 0.43 +0.8
600,423 + Shewana3_0508 0.57 +0.2
600,423 + Shewana3_0508 0.57 +0.5
600,457 - Shewana3_0508 0.60 +0.3
600,526 + Shewana3_0508 0.66 -0.9
600,534 - Shewana3_0508 0.66 +0.4
600,561 - Shewana3_0508 0.68 -1.2
600,595 + Shewana3_0508 0.71 -0.2

Or see this region's nucleotide sequence