Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0506 and Shewana3_0507 are separated by 158 nucleotides Shewana3_0507 and Shewana3_0508 are separated by 91 nucleotides
Shewana3_0506: Shewana3_0506 - 3-octaprenyl-4hydroxybenzoate decarboxylase (RefSeq), at 597,225 to 598,706
_0506
Shewana3_0507: Shewana3_0507 - hypothetical protein (RefSeq), at 598,865 to 599,635
_0507
Shewana3_0508: Shewana3_0508 - major facilitator transporter (RefSeq), at 599,727 to 600,944
_0508
Position (kb)
598
599
600 Strain fitness (log2 ratio)
-2
-1
0
1 at 598.768 kb on + strand at 598.816 kb on + strand at 599.000 kb on - strand, within Shewana3_0507 at 599.287 kb on - strand, within Shewana3_0507 at 599.290 kb on + strand, within Shewana3_0507 at 599.305 kb on - strand, within Shewana3_0507 at 599.387 kb on - strand, within Shewana3_0507 at 599.640 kb on + strand at 599.648 kb on - strand at 599.760 kb on + strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.768 kb on - strand at 599.806 kb on + strand at 599.814 kb on - strand at 599.814 kb on - strand at 599.916 kb on - strand, within Shewana3_0508 at 599.970 kb on - strand, within Shewana3_0508 at 600.148 kb on - strand, within Shewana3_0508 at 600.254 kb on - strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.423 kb on + strand, within Shewana3_0508 at 600.457 kb on - strand, within Shewana3_0508 at 600.526 kb on + strand, within Shewana3_0508 at 600.534 kb on - strand, within Shewana3_0508 at 600.561 kb on - strand, within Shewana3_0508 at 600.595 kb on + strand, within Shewana3_0508
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 598,768 + +0.3 598,816 + -1.0 599,000 - Shewana3_0507 0.18 +0.3 599,287 - Shewana3_0507 0.55 -2.2 599,290 + Shewana3_0507 0.55 -1.4 599,305 - Shewana3_0507 0.57 -1.0 599,387 - Shewana3_0507 0.68 -1.1 599,640 + -0.7 599,648 - +0.1 599,760 + +0.1 599,768 - +0.2 599,768 - +1.3 599,768 - +0.3 599,806 + -0.5 599,814 - -1.7 599,814 - -1.2 599,916 - Shewana3_0508 0.16 -0.5 599,970 - Shewana3_0508 0.20 -0.1 600,148 - Shewana3_0508 0.35 +0.0 600,254 - Shewana3_0508 0.43 +0.8 600,423 + Shewana3_0508 0.57 +0.2 600,423 + Shewana3_0508 0.57 +0.5 600,457 - Shewana3_0508 0.60 +0.3 600,526 + Shewana3_0508 0.66 -0.9 600,534 - Shewana3_0508 0.66 +0.4 600,561 - Shewana3_0508 0.68 -1.2 600,595 + Shewana3_0508 0.71 -0.2
Or see this region's nucleotide sequence