Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0066 and Shewana3_0067 are separated by 256 nucleotides Shewana3_0067 and Shewana3_0068 are separated by 260 nucleotides
Shewana3_0066: Shewana3_0066 - sucrose phosphorylase (RefSeq), at 76,921 to 78,405
_0066
Shewana3_0067: Shewana3_0067 - sucrose permease scrT <small>(from data)</small>, at 78,662 to 79,882
_0067
Shewana3_0068: Shewana3_0068 - TonB-dependent receptor (RefSeq), at 80,143 to 82,539
_0068
Position (kb) 78
79
80 Strain fitness (log2 ratio) -2
-1
0
1 at 77.931 kb on + strand, within Shewana3_0066 at 77.939 kb on - strand, within Shewana3_0066 at 78.113 kb on + strand, within Shewana3_0066 at 78.226 kb on - strand, within Shewana3_0066 at 78.416 kb on + strand at 78.557 kb on - strand at 79.040 kb on - strand, within Shewana3_0067 at 79.218 kb on - strand, within Shewana3_0067 at 79.246 kb on + strand, within Shewana3_0067 at 79.424 kb on + strand, within Shewana3_0067 at 79.589 kb on + strand, within Shewana3_0067 at 79.599 kb on + strand, within Shewana3_0067 at 79.689 kb on + strand, within Shewana3_0067 at 79.689 kb on + strand, within Shewana3_0067 at 79.845 kb on - strand at 79.859 kb on + strand at 80.102 kb on + strand at 80.205 kb on + strand at 80.266 kb on - strand at 80.267 kb on + strand at 80.275 kb on + strand at 80.276 kb on - strand at 80.331 kb on - strand at 80.352 kb on + strand at 80.354 kb on - strand at 80.399 kb on + strand, within Shewana3_0068 at 80.575 kb on + strand, within Shewana3_0068 at 80.622 kb on + strand, within Shewana3_0068 at 80.688 kb on + strand, within Shewana3_0068 at 80.850 kb on - strand, within Shewana3_0068
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 77,931 + Shewana3_0066 0.68 -2.4 77,939 - Shewana3_0066 0.69 -1.6 78,113 + Shewana3_0066 0.80 +0.5 78,226 - Shewana3_0066 0.88 -0.7 78,416 + -0.0 78,557 - +1.1 79,040 - Shewana3_0067 0.31 -1.2 79,218 - Shewana3_0067 0.46 +0.0 79,246 + Shewana3_0067 0.48 +0.5 79,424 + Shewana3_0067 0.62 +0.7 79,589 + Shewana3_0067 0.76 -1.1 79,599 + Shewana3_0067 0.77 +0.5 79,689 + Shewana3_0067 0.84 -0.8 79,689 + Shewana3_0067 0.84 -0.3 79,845 - -1.0 79,859 + +0.5 80,102 + -2.2 80,205 + +0.3 80,266 - -0.1 80,267 + -1.2 80,275 + -0.7 80,276 - -0.7 80,331 - -0.1 80,352 + -1.1 80,354 - +0.8 80,399 + Shewana3_0068 0.11 +1.4 80,575 + Shewana3_0068 0.18 +0.2 80,622 + Shewana3_0068 0.20 -1.2 80,688 + Shewana3_0068 0.23 +0.3 80,850 - Shewana3_0068 0.29 -0.6
Or see this region's nucleotide sequence