Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4385 and Shewana3_4386 are separated by 8 nucleotides Shewana3_4386 and Shewana3_4387 are separated by 13 nucleotides
Shewana3_4385: Shewana3_4385 - secretion protein HlyD (RefSeq), at 272,391 to 273,635
_4385
Shewana3_4386: Shewana3_4386 - outer membrane efflux protein (RefSeq), at 273,644 to 274,927
_4386
Shewana3_4387: Shewana3_4387 - peptidase M56, BlaR1 (RefSeq), at 274,941 to 275,921
_4387
Position (kb) 273
274
275 Strain fitness (log2 ratio) -1
0
1
2 at 272.872 kb on + strand, within Shewana3_4385 at 273.031 kb on - strand, within Shewana3_4385 at 273.485 kb on + strand, within Shewana3_4385 at 273.493 kb on - strand, within Shewana3_4385 at 273.514 kb on + strand at 273.766 kb on + strand at 273.827 kb on + strand, within Shewana3_4386 at 273.858 kb on - strand, within Shewana3_4386 at 273.902 kb on - strand, within Shewana3_4386 at 274.047 kb on + strand, within Shewana3_4386 at 274.048 kb on + strand, within Shewana3_4386 at 274.195 kb on - strand, within Shewana3_4386 at 274.245 kb on + strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.253 kb on - strand, within Shewana3_4386 at 274.335 kb on + strand, within Shewana3_4386 at 274.343 kb on - strand, within Shewana3_4386 at 274.363 kb on - strand, within Shewana3_4386 at 274.513 kb on - strand, within Shewana3_4386 at 274.660 kb on - strand, within Shewana3_4386 at 274.806 kb on - strand at 275.004 kb on - strand at 275.059 kb on + strand, within Shewana3_4387 at 275.232 kb on - strand, within Shewana3_4387 at 275.404 kb on + strand, within Shewana3_4387 at 275.438 kb on - strand, within Shewana3_4387 at 275.491 kb on + strand, within Shewana3_4387 at 275.497 kb on - strand, within Shewana3_4387 at 275.561 kb on - strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.733 kb on + strand, within Shewana3_4387 at 275.741 kb on - strand, within Shewana3_4387 at 275.752 kb on + strand, within Shewana3_4387 at 275.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 272,872 + Shewana3_4385 0.39 +0.1 273,031 - Shewana3_4385 0.51 +0.1 273,485 + Shewana3_4385 0.88 -1.4 273,493 - Shewana3_4385 0.89 +0.6 273,514 + -0.1 273,766 + -0.1 273,827 + Shewana3_4386 0.14 -0.3 273,858 - Shewana3_4386 0.17 -0.7 273,902 - Shewana3_4386 0.20 +0.0 274,047 + Shewana3_4386 0.31 +0.2 274,048 + Shewana3_4386 0.31 -0.4 274,195 - Shewana3_4386 0.43 +1.0 274,245 + Shewana3_4386 0.47 -0.7 274,253 - Shewana3_4386 0.47 +0.6 274,253 - Shewana3_4386 0.47 -0.9 274,335 + Shewana3_4386 0.54 +1.9 274,343 - Shewana3_4386 0.54 +0.2 274,363 - Shewana3_4386 0.56 +0.6 274,513 - Shewana3_4386 0.68 +0.1 274,660 - Shewana3_4386 0.79 -1.0 274,806 - -1.0 275,004 - +1.0 275,059 + Shewana3_4387 0.12 +1.3 275,232 - Shewana3_4387 0.30 -0.3 275,404 + Shewana3_4387 0.47 +0.3 275,438 - Shewana3_4387 0.51 +0.8 275,491 + Shewana3_4387 0.56 +0.6 275,497 - Shewana3_4387 0.57 -1.6 275,561 - Shewana3_4387 0.63 +0.0 275,733 + Shewana3_4387 0.81 +1.5 275,733 + Shewana3_4387 0.81 +0.2 275,741 - Shewana3_4387 0.82 +0.2 275,752 + Shewana3_4387 0.83 +1.8 275,833 - -0.2
Or see this region's nucleotide sequence