Strain Fitness in Shewanella loihica PV-4 around Shew_2453

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2452 and Shew_2453 are separated by 316 nucleotidesShew_2453 and Shew_2454 are separated by 75 nucleotidesShew_2454 and Shew_2455 are separated by 74 nucleotides Shew_2452: Shew_2452 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 2,882,168 to 2,883,550 _2452 Shew_2453: Shew_2453 - hypothetical protein (RefSeq), at 2,883,867 to 2,884,307 _2453 Shew_2454: Shew_2454 - hypothetical protein (RefSeq), at 2,884,383 to 2,884,889 _2454 Shew_2455: Shew_2455 - peptidase M23B (RefSeq), at 2,884,964 to 2,886,220 _2455 Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -1 0 1at 2883.653 kb on - strandat 2884.195 kb on - strand, within Shew_2453at 2885.175 kb on - strand, within Shew_2455at 2885.259 kb on + strand, within Shew_2455

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,883,653 - +0.6
2,884,195 - Shew_2453 0.74 +1.0
2,885,175 - Shew_2455 0.17 -0.1
2,885,259 + Shew_2455 0.23 -0.1

Or see this region's nucleotide sequence