Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1474 and Shew_1475 are separated by 301 nucleotides Shew_1475 and Shew_1476 are separated by 57 nucleotides Shew_1476 and Shew_1477 overlap by 8 nucleotides
Shew_1474: Shew_1474 - peptidase M23B (RefSeq), at 1,699,794 to 1,700,657
_1474
Shew_1475: Shew_1475 - hypothetical protein (RefSeq), at 1,700,959 to 1,701,648
_1475
Shew_1476: Shew_1476 - RNA polymerase sigma factor (RefSeq), at 1,701,706 to 1,702,344
_1476
Shew_1477: Shew_1477 - anti-ECFsigma factor, ChrR (RefSeq), at 1,702,337 to 1,703,086
_1477
Position (kb) 1700
1701
1702 Strain fitness (log2 ratio) -2
-1
0
1 at 1700.148 kb on + strand, within Shew_1474 at 1700.173 kb on - strand, within Shew_1474 at 1700.825 kb on + strand at 1701.098 kb on - strand, within Shew_1475 at 1701.248 kb on + strand, within Shew_1475 at 1701.413 kb on + strand, within Shew_1475 at 1701.744 kb on - strand at 1701.933 kb on - strand, within Shew_1476 at 1702.007 kb on - strand, within Shew_1476 at 1702.203 kb on + strand, within Shew_1476
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 1,700,148 + Shew_1474 0.41 -0.3 1,700,173 - Shew_1474 0.44 -1.3 1,700,825 + -0.3 1,701,098 - Shew_1475 0.20 -1.8 1,701,248 + Shew_1475 0.42 -1.9 1,701,413 + Shew_1475 0.66 -1.3 1,701,744 - -2.7 1,701,933 - Shew_1476 0.36 +0.4 1,702,007 - Shew_1476 0.47 -1.4 1,702,203 + Shew_1476 0.78 +0.1
Or see this region's nucleotide sequence