Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0864 and Shew_0865 are separated by 114 nucleotides Shew_0865 and Shew_0866 are separated by 197 nucleotides Shew_0866 and Shew_0867 are separated by 307 nucleotides
Shew_0864: Shew_0864 - Dyp-type peroxidase family protein (RefSeq), at 985,762 to 986,706
_0864
Shew_0865: Shew_0865 - cupin 2 domain-containing protein (RefSeq), at 986,821 to 987,279
_0865
Shew_0866: Shew_0866 - arginine repressor (RefSeq), at 987,477 to 987,947
_0866
Shew_0867: Shew_0867 - malate dehydrogenase (RefSeq), at 988,255 to 989,190
_0867
Position (kb) 986
987
988 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 986.004 kb on + strand, within Shew_0864 at 986.889 kb on - strand, within Shew_0865 at 986.930 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.027 kb on + strand, within Shew_0865 at 987.035 kb on - strand, within Shew_0865 at 987.035 kb on - strand, within Shew_0865 at 987.078 kb on - strand, within Shew_0865 at 987.080 kb on + strand, within Shew_0865 at 987.088 kb on - strand, within Shew_0865 at 987.308 kb on + strand at 987.384 kb on - strand at 987.434 kb on - strand at 987.451 kb on + strand at 987.459 kb on - strand at 987.846 kb on - strand, within Shew_0866
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 986,004 + Shew_0864 0.26 -1.8 986,889 - Shew_0865 0.15 -0.1 986,930 + Shew_0865 0.24 +0.7 987,027 + Shew_0865 0.45 +0.5 987,027 + Shew_0865 0.45 -0.3 987,027 + Shew_0865 0.45 -0.5 987,035 - Shew_0865 0.47 -0.4 987,035 - Shew_0865 0.47 +1.5 987,078 - Shew_0865 0.56 -0.8 987,080 + Shew_0865 0.56 -0.1 987,088 - Shew_0865 0.58 +0.1 987,308 + +0.2 987,384 - +0.3 987,434 - -0.3 987,451 + +0.6 987,459 - -0.3 987,846 - Shew_0866 0.78 +3.0
Or see this region's nucleotide sequence