Strain Fitness in Shewanella loihica PV-4 around Shew_0628

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0627 and Shew_0628 are separated by 265 nucleotidesShew_0628 and Shew_0629 are separated by 47 nucleotidesShew_0629 and Shew_0630 are separated by 2 nucleotides Shew_0627: Shew_0627 - hypothetical protein (RefSeq), at 711,801 to 712,757 _0627 Shew_0628: Shew_0628 - (glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 713,023 to 715,893 _0628 Shew_0629: Shew_0629 - extracellular solute-binding protein (RefSeq), at 715,941 to 716,714 _0629 Shew_0630: Shew_0630 - hypothetical protein (RefSeq), at 716,717 to 717,529 _0630 Position (kb) 713 714 715 716Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 712.196 kb on - strand, within Shew_0627at 712.231 kb on + strand, within Shew_0627at 712.636 kb on - strand, within Shew_0627at 712.636 kb on - strand, within Shew_0627at 712.636 kb on - strand, within Shew_0627at 712.642 kb on + strand, within Shew_0627at 712.642 kb on + strand, within Shew_0627at 712.642 kb on + strand, within Shew_0627at 712.650 kb on - strand, within Shew_0627at 712.776 kb on + strandat 713.310 kb on + strand, within Shew_0628at 713.318 kb on - strand, within Shew_0628at 713.318 kb on - strand, within Shew_0628at 713.478 kb on + strand, within Shew_0628at 713.488 kb on + strand, within Shew_0628at 713.829 kb on + strand, within Shew_0628at 714.128 kb on - strand, within Shew_0628at 714.207 kb on + strand, within Shew_0628at 714.223 kb on - strand, within Shew_0628at 714.282 kb on - strand, within Shew_0628at 714.474 kb on + strand, within Shew_0628at 714.521 kb on + strand, within Shew_0628at 714.529 kb on - strand, within Shew_0628at 714.833 kb on + strand, within Shew_0628at 715.120 kb on - strand, within Shew_0628at 715.135 kb on + strand, within Shew_0628at 715.423 kb on - strand, within Shew_0628at 715.464 kb on + strand, within Shew_0628at 715.489 kb on + strand, within Shew_0628at 715.499 kb on + strand, within Shew_0628at 715.509 kb on + strand, within Shew_0628at 715.588 kb on - strand, within Shew_0628at 715.739 kb on - strandat 715.785 kb on + strandat 715.837 kb on - strandat 716.227 kb on + strand, within Shew_0629at 716.353 kb on + strand, within Shew_0629at 716.353 kb on + strand, within Shew_0629at 716.353 kb on + strand, within Shew_0629at 716.361 kb on - strand, within Shew_0629at 716.361 kb on - strand, within Shew_0629at 716.361 kb on - strand, within Shew_0629at 716.380 kb on - strand, within Shew_0629at 716.464 kb on + strand, within Shew_0629at 716.648 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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712,196 - Shew_0627 0.41 +0.6
712,231 + Shew_0627 0.45 +0.3
712,636 - Shew_0627 0.87 -0.3
712,636 - Shew_0627 0.87 +0.7
712,636 - Shew_0627 0.87 +0.1
712,642 + Shew_0627 0.88 +2.3
712,642 + Shew_0627 0.88 +0.1
712,642 + Shew_0627 0.88 -0.9
712,650 - Shew_0627 0.89 +0.1
712,776 + +0.2
713,310 + Shew_0628 0.10 -0.0
713,318 - Shew_0628 0.10 -2.4
713,318 - Shew_0628 0.10 -1.6
713,478 + Shew_0628 0.16 -1.6
713,488 + Shew_0628 0.16 -1.5
713,829 + Shew_0628 0.28 -1.9
714,128 - Shew_0628 0.38 -2.4
714,207 + Shew_0628 0.41 -2.4
714,223 - Shew_0628 0.42 -1.9
714,282 - Shew_0628 0.44 -2.0
714,474 + Shew_0628 0.51 -2.8
714,521 + Shew_0628 0.52 -3.4
714,529 - Shew_0628 0.52 -1.6
714,833 + Shew_0628 0.63 -2.0
715,120 - Shew_0628 0.73 -1.9
715,135 + Shew_0628 0.74 -0.6
715,423 - Shew_0628 0.84 -2.2
715,464 + Shew_0628 0.85 -1.5
715,489 + Shew_0628 0.86 -1.6
715,499 + Shew_0628 0.86 -2.0
715,509 + Shew_0628 0.87 -2.1
715,588 - Shew_0628 0.89 -2.2
715,739 - -1.2
715,785 + -1.3
715,837 - -1.1
716,227 + Shew_0629 0.37 -0.0
716,353 + Shew_0629 0.53 -1.3
716,353 + Shew_0629 0.53 -0.6
716,353 + Shew_0629 0.53 -0.1
716,361 - Shew_0629 0.54 +0.1
716,361 - Shew_0629 0.54 -0.9
716,361 - Shew_0629 0.54 +0.5
716,380 - Shew_0629 0.57 +0.0
716,464 + Shew_0629 0.68 -0.0
716,648 + -0.9

Or see this region's nucleotide sequence