Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0593 and Shew_0594 are separated by 174 nucleotides Shew_0594 and Shew_0595 are separated by 65 nucleotides Shew_0595 and Shew_0596 are separated by 100 nucleotides
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Shew_0594: Shew_0594 - hypothetical protein (RefSeq), at 672,071 to 672,271
_0594
Shew_0595: Shew_0595 - hypothetical protein (RefSeq), at 672,337 to 672,648
_0595
Shew_0596: Shew_0596 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 672,749 to 674,671
_0596
Position (kb) 672
673 Strain fitness (log2 ratio) -2
-1
0
1
2 at 671.169 kb on + strand, within Shew_0593 at 671.181 kb on + strand, within Shew_0593 at 671.595 kb on + strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.603 kb on - strand, within Shew_0593 at 671.730 kb on + strand at 671.739 kb on + strand at 671.954 kb on + strand at 672.136 kb on + strand, within Shew_0594 at 672.136 kb on + strand, within Shew_0594 at 672.219 kb on - strand, within Shew_0594 at 672.267 kb on - strand at 672.516 kb on + strand, within Shew_0595 at 672.982 kb on - strand, within Shew_0596
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 671,169 + Shew_0593 0.62 -0.5 671,181 + Shew_0593 0.63 -0.6 671,595 + Shew_0593 0.84 -1.0 671,603 - Shew_0593 0.85 -0.7 671,603 - Shew_0593 0.85 -2.0 671,730 + +0.3 671,739 + +0.5 671,954 + -0.3 672,136 + Shew_0594 0.32 +0.6 672,136 + Shew_0594 0.32 +1.4 672,219 - Shew_0594 0.74 +2.1 672,267 - +0.2 672,516 + Shew_0595 0.57 -1.0 672,982 - Shew_0596 0.12 +0.7
Or see this region's nucleotide sequence