Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0467 and Shew_0468 are separated by 196 nucleotides Shew_0468 and Shew_0469 are separated by 2 nucleotides Shew_0469 and Shew_0470 are separated by 16 nucleotides
Shew_0467: Shew_0467 - RND family efflux transporter MFP subunit (RefSeq), at 524,597 to 525,679
_0467
Shew_0468: Shew_0468 - LysR family transcriptional regulator (RefSeq), at 525,876 to 526,820
_0468
Shew_0469: Shew_0469 - pentapeptide repeat-containing protein (RefSeq), at 526,823 to 527,494
_0469
Shew_0470: Shew_0470 - MATE efflux family protein (RefSeq), at 527,511 to 528,878
_0470
Position (kb) 525
526
527 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 524.994 kb on + strand, within Shew_0467 at 525.179 kb on - strand, within Shew_0467 at 525.214 kb on + strand, within Shew_0467 at 525.214 kb on + strand, within Shew_0467 at 525.233 kb on - strand, within Shew_0467 at 525.255 kb on - strand, within Shew_0467 at 525.579 kb on - strand at 525.897 kb on - strand at 525.907 kb on - strand at 526.044 kb on - strand, within Shew_0468 at 526.106 kb on + strand, within Shew_0468 at 526.192 kb on - strand, within Shew_0468 at 526.549 kb on + strand, within Shew_0468 at 526.557 kb on - strand, within Shew_0468 at 527.035 kb on + strand, within Shew_0469 at 527.573 kb on + strand at 527.763 kb on + strand, within Shew_0470
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 524,994 + Shew_0467 0.37 -1.8 525,179 - Shew_0467 0.54 -0.9 525,214 + Shew_0467 0.57 -0.4 525,214 + Shew_0467 0.57 -0.4 525,233 - Shew_0467 0.59 -0.6 525,255 - Shew_0467 0.61 +0.0 525,579 - -0.2 525,897 - -0.0 525,907 - +0.0 526,044 - Shew_0468 0.18 -0.7 526,106 + Shew_0468 0.24 -0.7 526,192 - Shew_0468 0.33 -0.4 526,549 + Shew_0468 0.71 -0.2 526,557 - Shew_0468 0.72 -1.0 527,035 + Shew_0469 0.32 -0.1 527,573 + +1.4 527,763 + Shew_0470 0.18 +3.9
Or see this region's nucleotide sequence