Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0345 and Shew_0346 overlap by 4 nucleotides Shew_0346 and Shew_0347 are separated by 2 nucleotides Shew_0347 and Shew_0348 are separated by 437 nucleotides
Shew_0345: Shew_0345 - redoxin domain-containing protein (RefSeq), at 393,299 to 393,934
_0345
Shew_0346: Shew_0346 - cytochrome C biogenesis protein (RefSeq), at 393,931 to 394,377
_0346
Shew_0347: Shew_0347 - cytochrome c assembly protein (RefSeq), at 394,380 to 396,371
_0347
Shew_0348: Shew_0348 - cytochrome c, putative (RefSeq), at 396,809 to 398,848
_0348
Position (kb) 394
395
396
397 Strain fitness (log2 ratio) -1
0
1
2 at 393.453 kb on - strand, within Shew_0345 at 393.486 kb on + strand, within Shew_0345 at 393.789 kb on + strand, within Shew_0345 at 393.896 kb on - strand at 394.129 kb on - strand, within Shew_0346 at 394.217 kb on - strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.224 kb on + strand, within Shew_0346 at 394.232 kb on - strand, within Shew_0346 at 394.618 kb on + strand, within Shew_0347 at 395.452 kb on - strand, within Shew_0347 at 395.510 kb on - strand, within Shew_0347 at 395.691 kb on + strand, within Shew_0347 at 395.694 kb on - strand, within Shew_0347 at 395.751 kb on - strand, within Shew_0347 at 395.776 kb on + strand, within Shew_0347 at 396.023 kb on - strand, within Shew_0347 at 396.040 kb on - strand, within Shew_0347 at 396.055 kb on - strand, within Shew_0347 at 396.170 kb on - strand, within Shew_0347 at 396.180 kb on + strand at 396.227 kb on + strand at 396.234 kb on - strand at 396.260 kb on + strand at 396.275 kb on - strand at 396.290 kb on + strand at 396.356 kb on - strand at 396.392 kb on + strand at 396.416 kb on - strand at 396.416 kb on - strand at 396.420 kb on + strand at 396.420 kb on + strand at 396.828 kb on + strand at 396.831 kb on - strand at 396.855 kb on - strand at 396.890 kb on + strand at 396.898 kb on - strand at 396.961 kb on + strand at 396.961 kb on + strand at 397.074 kb on + strand, within Shew_0348 at 397.153 kb on + strand, within Shew_0348 at 397.153 kb on + strand, within Shew_0348 at 397.163 kb on + strand, within Shew_0348 at 397.163 kb on + strand, within Shew_0348 at 397.171 kb on - strand, within Shew_0348 at 397.171 kb on - strand, within Shew_0348 at 397.367 kb on - strand, within Shew_0348
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 393,453 - Shew_0345 0.24 +0.2 393,486 + Shew_0345 0.29 +0.3 393,789 + Shew_0345 0.77 +0.6 393,896 - +0.4 394,129 - Shew_0346 0.44 -0.0 394,217 - Shew_0346 0.64 +0.0 394,224 + Shew_0346 0.66 -0.1 394,224 + Shew_0346 0.66 -0.1 394,224 + Shew_0346 0.66 -0.4 394,232 - Shew_0346 0.67 -0.1 394,618 + Shew_0347 0.12 -0.1 395,452 - Shew_0347 0.54 -0.9 395,510 - Shew_0347 0.57 +0.2 395,691 + Shew_0347 0.66 -1.2 395,694 - Shew_0347 0.66 +1.2 395,751 - Shew_0347 0.69 +0.3 395,776 + Shew_0347 0.70 -0.7 396,023 - Shew_0347 0.82 +2.4 396,040 - Shew_0347 0.83 +1.0 396,055 - Shew_0347 0.84 +0.2 396,170 - Shew_0347 0.90 -0.6 396,180 + +0.1 396,227 + -1.2 396,234 - +0.3 396,260 + -0.6 396,275 - +0.3 396,290 + -0.1 396,356 - +0.3 396,392 + +0.2 396,416 - +1.1 396,416 - +0.9 396,420 + -1.1 396,420 + +0.1 396,828 + +0.3 396,831 - +0.1 396,855 - -0.5 396,890 + +0.3 396,898 - +0.3 396,961 + -0.4 396,961 + +0.2 397,074 + Shew_0348 0.13 +0.5 397,153 + Shew_0348 0.17 -0.5 397,153 + Shew_0348 0.17 -0.1 397,163 + Shew_0348 0.17 +2.6 397,163 + Shew_0348 0.17 +0.0 397,171 - Shew_0348 0.18 -0.1 397,171 - Shew_0348 0.18 +0.1 397,367 - Shew_0348 0.27 +0.1
Or see this region's nucleotide sequence