Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1454

Experiment: Control plate grown in contant light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpaB and plsX are separated by 150 nucleotidesplsX and fabH are separated by 69 nucleotides Synpcc7942_1453: rpaB - two component transcriptional regulator, winged helix family, at 1,506,399 to 1,507,133 rpaB Synpcc7942_1454: plsX - fatty acid/phospholipid synthesis protein, at 1,507,284 to 1,508,324 plsX Synpcc7942_1455: fabH - 3-oxoacyl-(acyl carrier protein) synthase III, at 1,508,394 to 1,509,401 fabH Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1507.105 kb on + strandat 1507.105 kb on + strandat 1507.105 kb on + strandat 1507.105 kb on + strandat 1507.115 kb on + strandat 1507.127 kb on + strandat 1507.187 kb on + strandat 1507.195 kb on - strandat 1507.228 kb on + strandat 1507.238 kb on + strandat 1507.238 kb on + strandat 1507.246 kb on - strandat 1507.246 kb on - strandat 1508.279 kb on + strandat 1508.324 kb on + strandat 1508.357 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control plate grown in contant light
remove
1,507,105 + +0.6
1,507,105 + -2.1
1,507,105 + +2.2
1,507,105 + -0.3
1,507,115 + -1.6
1,507,127 + -2.8
1,507,187 + +2.0
1,507,195 - +1.6
1,507,228 + +0.9
1,507,238 + +2.8
1,507,238 + -0.9
1,507,246 - +1.2
1,507,246 - +1.0
1,508,279 + -2.3
1,508,324 + -0.0
1,508,357 - -2.8

Or see this region's nucleotide sequence