Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0629

Experiment: Control plate grown in contant light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0627 and Synpcc7942_0628 are separated by 50 nucleotidesSynpcc7942_0628 and Synpcc7942_0629 overlap by 4 nucleotidesSynpcc7942_0629 and Synpcc7942_0630 are separated by 91 nucleotides Synpcc7942_0627: Synpcc7942_0627 - hypothetical protein, at 620,462 to 621,226 _0627 Synpcc7942_0628: Synpcc7942_0628 - spermidine synthase, at 621,277 to 622,137 _0628 Synpcc7942_0629: Synpcc7942_0629 - hypothetical protein, at 622,134 to 622,340 _0629 Synpcc7942_0630: Synpcc7942_0630 - hypothetical protein, at 622,432 to 623,574 _0630 Position (kb) 622 623Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 621.175 kb on + strandat 621.212 kb on + strandat 621.223 kb on + strandat 621.228 kb on - strandat 621.233 kb on + strandat 621.235 kb on + strandat 621.240 kb on + strandat 621.243 kb on - strandat 621.248 kb on - strandat 621.248 kb on - strandat 621.248 kb on - strandat 621.251 kb on + strandat 621.256 kb on + strandat 621.259 kb on - strandat 621.261 kb on + strandat 621.274 kb on + strandat 621.352 kb on - strandat 621.657 kb on + strand, within Synpcc7942_0628at 621.704 kb on + strand, within Synpcc7942_0628at 621.712 kb on - strand, within Synpcc7942_0628at 621.716 kb on - strand, within Synpcc7942_0628at 621.821 kb on + strand, within Synpcc7942_0628at 621.885 kb on + strand, within Synpcc7942_0628at 621.930 kb on + strand, within Synpcc7942_0628at 621.995 kb on + strand, within Synpcc7942_0628at 622.093 kb on - strandat 622.113 kb on + strandat 622.122 kb on - strandat 622.126 kb on + strandat 622.140 kb on - strandat 622.163 kb on + strand, within Synpcc7942_0629at 622.175 kb on - strand, within Synpcc7942_0629at 622.200 kb on + strand, within Synpcc7942_0629at 622.209 kb on + strand, within Synpcc7942_0629at 622.216 kb on + strand, within Synpcc7942_0629at 622.217 kb on - strand, within Synpcc7942_0629at 622.217 kb on - strand, within Synpcc7942_0629at 622.221 kb on + strand, within Synpcc7942_0629at 622.222 kb on - strand, within Synpcc7942_0629at 622.227 kb on - strand, within Synpcc7942_0629at 622.250 kb on - strandat 622.262 kb on + strand, within Synpcc7942_0629at 622.264 kb on + strand, within Synpcc7942_0629at 622.272 kb on + strand, within Synpcc7942_0629at 622.280 kb on - strand, within Synpcc7942_0629at 622.310 kb on + strand, within Synpcc7942_0629at 622.335 kb on + strandat 622.346 kb on + strandat 622.377 kb on - strandat 622.426 kb on + strandat 622.439 kb on + strandat 622.449 kb on + strandat 622.449 kb on + strandat 622.449 kb on + strandat 622.467 kb on - strandat 622.479 kb on + strandat 622.500 kb on - strandat 622.512 kb on - strandat 622.526 kb on - strandat 622.553 kb on + strand, within Synpcc7942_0630at 622.556 kb on - strand, within Synpcc7942_0630at 622.676 kb on + strand, within Synpcc7942_0630at 622.684 kb on - strandat 622.708 kb on + strand, within Synpcc7942_0630at 622.708 kb on + strand, within Synpcc7942_0630at 622.708 kb on + strand, within Synpcc7942_0630at 622.715 kb on + strand, within Synpcc7942_0630at 622.716 kb on - strand, within Synpcc7942_0630at 622.729 kb on - strand, within Synpcc7942_0630at 622.742 kb on + strand, within Synpcc7942_0630at 622.750 kb on - strand, within Synpcc7942_0630at 622.761 kb on - strand, within Synpcc7942_0630at 622.766 kb on + strand, within Synpcc7942_0630at 622.766 kb on - strand, within Synpcc7942_0630at 622.778 kb on + strand, within Synpcc7942_0630at 622.788 kb on + strand, within Synpcc7942_0630at 622.788 kb on + strand, within Synpcc7942_0630at 622.808 kb on - strand, within Synpcc7942_0630at 622.808 kb on - strand, within Synpcc7942_0630at 622.812 kb on + strand, within Synpcc7942_0630at 622.840 kb on + strand, within Synpcc7942_0630at 622.842 kb on + strand, within Synpcc7942_0630at 622.843 kb on - strand, within Synpcc7942_0630at 622.847 kb on + strand, within Synpcc7942_0630at 622.855 kb on - strand, within Synpcc7942_0630at 622.872 kb on - strand, within Synpcc7942_0630at 622.881 kb on + strand, within Synpcc7942_0630at 622.942 kb on + strand, within Synpcc7942_0630at 622.944 kb on + strand, within Synpcc7942_0630at 622.975 kb on + strand, within Synpcc7942_0630at 622.975 kb on - strand, within Synpcc7942_0630at 622.998 kb on - strand, within Synpcc7942_0630at 623.025 kb on - strand, within Synpcc7942_0630at 623.045 kb on + strand, within Synpcc7942_0630at 623.049 kb on + strand, within Synpcc7942_0630at 623.069 kb on + strand, within Synpcc7942_0630at 623.118 kb on + strand, within Synpcc7942_0630at 623.157 kb on + strand, within Synpcc7942_0630at 623.223 kb on + strand, within Synpcc7942_0630at 623.223 kb on + strand, within Synpcc7942_0630at 623.223 kb on - strand, within Synpcc7942_0630at 623.226 kb on - strand, within Synpcc7942_0630at 623.231 kb on - strand, within Synpcc7942_0630at 623.256 kb on - strand, within Synpcc7942_0630at 623.263 kb on - strand, within Synpcc7942_0630at 623.280 kb on - strand, within Synpcc7942_0630at 623.287 kb on - strand, within Synpcc7942_0630at 623.287 kb on - strand, within Synpcc7942_0630at 623.298 kb on + strand, within Synpcc7942_0630at 623.330 kb on + strand, within Synpcc7942_0630

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Per-strain Table

Position Strand Gene LocusTag Fraction Control plate grown in contant light
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621,175 + -4.0
621,212 + +2.7
621,223 + +1.1
621,228 - -1.3
621,233 + +0.9
621,235 + +0.0
621,240 + -1.9
621,243 - +0.8
621,248 - +1.6
621,248 - +1.8
621,248 - -3.1
621,251 + -0.9
621,256 + -1.1
621,259 - -3.5
621,261 + -1.6
621,274 + +2.2
621,352 - -2.6
621,657 + Synpcc7942_0628 0.44 -1.3
621,704 + Synpcc7942_0628 0.50 -0.1
621,712 - Synpcc7942_0628 0.51 -1.8
621,716 - Synpcc7942_0628 0.51 -0.8
621,821 + Synpcc7942_0628 0.63 -1.5
621,885 + Synpcc7942_0628 0.71 -1.6
621,930 + Synpcc7942_0628 0.76 -1.9
621,995 + Synpcc7942_0628 0.83 +1.8
622,093 - -1.8
622,113 + +0.8
622,122 - +0.9
622,126 + -3.1
622,140 - +0.8
622,163 + Synpcc7942_0629 0.14 -2.0
622,175 - Synpcc7942_0629 0.20 +0.5
622,200 + Synpcc7942_0629 0.32 -2.2
622,209 + Synpcc7942_0629 0.36 +3.5
622,216 + Synpcc7942_0629 0.40 +1.6
622,217 - Synpcc7942_0629 0.40 -1.1
622,217 - Synpcc7942_0629 0.40 +1.3
622,221 + Synpcc7942_0629 0.42 +0.8
622,222 - Synpcc7942_0629 0.43 -3.9
622,227 - Synpcc7942_0629 0.45 -2.6
622,250 - -1.1
622,262 + Synpcc7942_0629 0.62 -2.6
622,264 + Synpcc7942_0629 0.63 +1.4
622,272 + Synpcc7942_0629 0.67 -2.4
622,280 - Synpcc7942_0629 0.71 -1.5
622,310 + Synpcc7942_0629 0.85 +0.1
622,335 + +0.3
622,346 + +0.7
622,377 - -0.2
622,426 + +2.1
622,439 + +1.5
622,449 + +3.2
622,449 + -1.5
622,449 + -0.8
622,467 - -0.6
622,479 + -2.1
622,500 - -0.2
622,512 - -2.2
622,526 - -2.9
622,553 + Synpcc7942_0630 0.11 +0.6
622,556 - Synpcc7942_0630 0.11 -1.8
622,676 + Synpcc7942_0630 0.21 +1.9
622,684 - +0.6
622,708 + Synpcc7942_0630 0.24 +2.9
622,708 + Synpcc7942_0630 0.24 -0.7
622,708 + Synpcc7942_0630 0.24 +2.3
622,715 + Synpcc7942_0630 0.25 +1.6
622,716 - Synpcc7942_0630 0.25 +1.1
622,729 - Synpcc7942_0630 0.26 -2.9
622,742 + Synpcc7942_0630 0.27 -1.7
622,750 - Synpcc7942_0630 0.28 +1.2
622,761 - Synpcc7942_0630 0.29 +1.3
622,766 + Synpcc7942_0630 0.29 +0.5
622,766 - Synpcc7942_0630 0.29 -3.1
622,778 + Synpcc7942_0630 0.30 -2.1
622,788 + Synpcc7942_0630 0.31 -1.1
622,788 + Synpcc7942_0630 0.31 +1.4
622,808 - Synpcc7942_0630 0.33 +2.2
622,808 - Synpcc7942_0630 0.33 +3.0
622,812 + Synpcc7942_0630 0.33 +0.3
622,840 + Synpcc7942_0630 0.36 +0.7
622,842 + Synpcc7942_0630 0.36 +1.7
622,843 - Synpcc7942_0630 0.36 +0.8
622,847 + Synpcc7942_0630 0.36 +0.5
622,855 - Synpcc7942_0630 0.37 +3.0
622,872 - Synpcc7942_0630 0.38 +2.3
622,881 + Synpcc7942_0630 0.39 -0.2
622,942 + Synpcc7942_0630 0.45 -3.2
622,944 + Synpcc7942_0630 0.45 -1.7
622,975 + Synpcc7942_0630 0.48 +0.3
622,975 - Synpcc7942_0630 0.48 -3.3
622,998 - Synpcc7942_0630 0.50 +2.8
623,025 - Synpcc7942_0630 0.52 +0.2
623,045 + Synpcc7942_0630 0.54 +1.8
623,049 + Synpcc7942_0630 0.54 +0.2
623,069 + Synpcc7942_0630 0.56 +2.0
623,118 + Synpcc7942_0630 0.60 +1.5
623,157 + Synpcc7942_0630 0.63 +0.9
623,223 + Synpcc7942_0630 0.69 -0.5
623,223 + Synpcc7942_0630 0.69 +1.4
623,223 - Synpcc7942_0630 0.69 -1.9
623,226 - Synpcc7942_0630 0.69 +2.5
623,231 - Synpcc7942_0630 0.70 +1.7
623,256 - Synpcc7942_0630 0.72 -1.5
623,263 - Synpcc7942_0630 0.73 +1.3
623,280 - Synpcc7942_0630 0.74 +2.3
623,287 - Synpcc7942_0630 0.75 +2.6
623,287 - Synpcc7942_0630 0.75 +1.5
623,298 + Synpcc7942_0630 0.76 +2.9
623,330 + Synpcc7942_0630 0.79 +0.6

Or see this region's nucleotide sequence