Experiment: Control plate grown in contant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0480 and Synpcc7942_0481 are separated by 78 nucleotides Synpcc7942_0481 and Synpcc7942_0482 are separated by 175 nucleotides
Synpcc7942_0480: Synpcc7942_0480 - GAF sensor signal transduction histidine kinase, at 463,901 to 465,634
_0480
Synpcc7942_0481: Synpcc7942_0481 - protease, at 465,713 to 466,828
_0481
Synpcc7942_0482: Synpcc7942_0482 - Peptidoglycan glycosyltransferase, at 467,004 to 468,773
_0482
Position (kb) 465
466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 464.718 kb on - strand, within Synpcc7942_0480 at 464.718 kb on - strand, within Synpcc7942_0480 at 464.745 kb on - strand, within Synpcc7942_0480 at 464.758 kb on + strand, within Synpcc7942_0480 at 464.768 kb on + strand, within Synpcc7942_0480 at 464.773 kb on + strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.776 kb on - strand, within Synpcc7942_0480 at 464.781 kb on - strand, within Synpcc7942_0480 at 464.800 kb on - strand, within Synpcc7942_0480 at 464.806 kb on - strand, within Synpcc7942_0480 at 464.826 kb on + strand, within Synpcc7942_0480 at 464.865 kb on - strand, within Synpcc7942_0480 at 464.881 kb on + strand, within Synpcc7942_0480 at 464.907 kb on - strand, within Synpcc7942_0480 at 464.925 kb on - strand, within Synpcc7942_0480 at 464.969 kb on + strand, within Synpcc7942_0480 at 464.996 kb on - strand, within Synpcc7942_0480 at 465.000 kb on + strand, within Synpcc7942_0480 at 465.008 kb on - strand, within Synpcc7942_0480 at 465.011 kb on + strand, within Synpcc7942_0480 at 465.052 kb on - strand, within Synpcc7942_0480 at 465.073 kb on + strand, within Synpcc7942_0480 at 465.099 kb on - strand, within Synpcc7942_0480 at 465.112 kb on + strand, within Synpcc7942_0480 at 465.134 kb on + strand, within Synpcc7942_0480 at 465.163 kb on - strand, within Synpcc7942_0480 at 465.165 kb on - strand, within Synpcc7942_0480 at 465.174 kb on + strand, within Synpcc7942_0480 at 465.179 kb on + strand, within Synpcc7942_0480 at 465.187 kb on - strand, within Synpcc7942_0480 at 465.191 kb on + strand, within Synpcc7942_0480 at 465.194 kb on - strand, within Synpcc7942_0480 at 465.204 kb on - strand, within Synpcc7942_0480 at 465.238 kb on + strand, within Synpcc7942_0480 at 465.246 kb on - strand, within Synpcc7942_0480 at 465.272 kb on + strand, within Synpcc7942_0480 at 465.273 kb on + strand, within Synpcc7942_0480 at 465.274 kb on + strand, within Synpcc7942_0480 at 465.281 kb on + strand, within Synpcc7942_0480 at 465.282 kb on - strand, within Synpcc7942_0480 at 465.282 kb on - strand, within Synpcc7942_0480 at 465.289 kb on - strand, within Synpcc7942_0480 at 465.318 kb on + strand, within Synpcc7942_0480 at 465.322 kb on - strand, within Synpcc7942_0480 at 465.326 kb on - strand, within Synpcc7942_0480 at 465.352 kb on + strand, within Synpcc7942_0480 at 465.360 kb on - strand, within Synpcc7942_0480 at 465.384 kb on + strand, within Synpcc7942_0480 at 465.384 kb on + strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.392 kb on - strand, within Synpcc7942_0480 at 465.404 kb on - strand, within Synpcc7942_0480 at 465.414 kb on - strand, within Synpcc7942_0480 at 465.460 kb on - strand, within Synpcc7942_0480 at 465.461 kb on - strand at 465.463 kb on + strand at 465.479 kb on - strand at 465.508 kb on - strand at 465.508 kb on - strand at 465.508 kb on - strand at 465.509 kb on - strand at 465.509 kb on - strand at 465.517 kb on + strand at 465.519 kb on + strand at 465.532 kb on + strand at 465.535 kb on + strand at 465.537 kb on + strand at 465.538 kb on - strand at 465.545 kb on - strand at 465.559 kb on + strand at 465.564 kb on + strand at 465.569 kb on + strand at 465.572 kb on - strand at 465.583 kb on - strand at 465.587 kb on + strand at 465.596 kb on + strand at 465.646 kb on - strand at 465.665 kb on - strand at 465.666 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.668 kb on + strand at 465.676 kb on - strand at 465.739 kb on + strand at 465.743 kb on + strand at 465.743 kb on + strand at 465.743 kb on - strand at 465.750 kb on + strand at 465.750 kb on + strand at 465.750 kb on + strand at 465.758 kb on - strand at 465.758 kb on - strand at 465.758 kb on - strand at 465.781 kb on - strand at 465.800 kb on + strand at 465.800 kb on + strand at 465.801 kb on + strand at 465.801 kb on + strand at 465.808 kb on - strand at 465.808 kb on - strand at 465.809 kb on - strand at 465.809 kb on - strand at 465.809 kb on - strand at 465.809 kb on - strand at 465.814 kb on + strand at 465.816 kb on - strand at 465.820 kb on + strand at 465.821 kb on - strand at 465.828 kb on + strand, within Synpcc7942_0481 at 465.828 kb on + strand, within Synpcc7942_0481 at 465.828 kb on - strand, within Synpcc7942_0481 at 465.828 kb on - strand, within Synpcc7942_0481 at 465.831 kb on - strand, within Synpcc7942_0481 at 465.833 kb on + strand, within Synpcc7942_0481 at 465.837 kb on + strand, within Synpcc7942_0481 at 465.845 kb on - strand, within Synpcc7942_0481 at 465.879 kb on - strand, within Synpcc7942_0481 at 465.902 kb on + strand, within Synpcc7942_0481 at 465.902 kb on + strand, within Synpcc7942_0481 at 465.910 kb on - strand, within Synpcc7942_0481 at 465.910 kb on - strand, within Synpcc7942_0481 at 465.980 kb on + strand at 466.004 kb on - strand, within Synpcc7942_0481 at 466.043 kb on + strand, within Synpcc7942_0481 at 466.086 kb on - strand, within Synpcc7942_0481 at 466.147 kb on - strand, within Synpcc7942_0481 at 466.177 kb on - strand, within Synpcc7942_0481 at 466.217 kb on + strand, within Synpcc7942_0481 at 466.225 kb on - strand, within Synpcc7942_0481 at 466.228 kb on + strand, within Synpcc7942_0481 at 466.277 kb on - strand, within Synpcc7942_0481 at 466.282 kb on - strand, within Synpcc7942_0481 at 466.305 kb on - strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.318 kb on + strand, within Synpcc7942_0481 at 466.341 kb on - strand, within Synpcc7942_0481 at 466.436 kb on + strand, within Synpcc7942_0481 at 466.626 kb on + strand, within Synpcc7942_0481 at 466.634 kb on - strand, within Synpcc7942_0481 at 466.637 kb on + strand, within Synpcc7942_0481 at 466.645 kb on - strand, within Synpcc7942_0481 at 466.715 kb on - strand, within Synpcc7942_0481 at 466.731 kb on - strand at 466.756 kb on + strand at 466.809 kb on + strand at 466.847 kb on - strand at 466.887 kb on - strand at 466.892 kb on - strand at 466.909 kb on + strand at 466.909 kb on + strand at 466.915 kb on - strand at 466.922 kb on - strand at 466.930 kb on - strand at 466.967 kb on - strand at 467.001 kb on + strand at 467.015 kb on - strand at 467.015 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control plate grown in contant light remove 464,718 - Synpcc7942_0480 0.47 -1.9 464,718 - Synpcc7942_0480 0.47 -0.6 464,745 - Synpcc7942_0480 0.49 +1.3 464,758 + Synpcc7942_0480 0.49 +0.6 464,768 + Synpcc7942_0480 0.50 -2.0 464,773 + Synpcc7942_0480 0.50 +3.3 464,776 - Synpcc7942_0480 0.50 +0.8 464,776 - Synpcc7942_0480 0.50 -1.3 464,776 - Synpcc7942_0480 0.50 -2.7 464,776 - Synpcc7942_0480 0.50 -1.8 464,781 - Synpcc7942_0480 0.51 +0.7 464,800 - Synpcc7942_0480 0.52 -0.0 464,806 - Synpcc7942_0480 0.52 -2.4 464,826 + Synpcc7942_0480 0.53 -0.8 464,865 - Synpcc7942_0480 0.56 -1.4 464,881 + Synpcc7942_0480 0.57 +2.5 464,907 - Synpcc7942_0480 0.58 +1.5 464,925 - Synpcc7942_0480 0.59 +2.5 464,969 + Synpcc7942_0480 0.62 -0.6 464,996 - Synpcc7942_0480 0.63 -2.4 465,000 + Synpcc7942_0480 0.63 -1.0 465,008 - Synpcc7942_0480 0.64 +1.2 465,011 + Synpcc7942_0480 0.64 -2.5 465,052 - Synpcc7942_0480 0.66 +1.5 465,073 + Synpcc7942_0480 0.68 +1.3 465,099 - Synpcc7942_0480 0.69 +0.8 465,112 + Synpcc7942_0480 0.70 +2.3 465,134 + Synpcc7942_0480 0.71 +1.0 465,163 - Synpcc7942_0480 0.73 -1.3 465,165 - Synpcc7942_0480 0.73 -2.9 465,174 + Synpcc7942_0480 0.73 -2.5 465,179 + Synpcc7942_0480 0.74 +1.6 465,187 - Synpcc7942_0480 0.74 -3.6 465,191 + Synpcc7942_0480 0.74 +1.1 465,194 - Synpcc7942_0480 0.75 +0.9 465,204 - Synpcc7942_0480 0.75 -0.6 465,238 + Synpcc7942_0480 0.77 +0.7 465,246 - Synpcc7942_0480 0.78 +1.0 465,272 + Synpcc7942_0480 0.79 -1.6 465,273 + Synpcc7942_0480 0.79 -1.6 465,274 + Synpcc7942_0480 0.79 -2.7 465,281 + Synpcc7942_0480 0.80 -1.4 465,282 - Synpcc7942_0480 0.80 -0.3 465,282 - Synpcc7942_0480 0.80 +2.9 465,289 - Synpcc7942_0480 0.80 +2.0 465,318 + Synpcc7942_0480 0.82 -3.0 465,322 - Synpcc7942_0480 0.82 +0.7 465,326 - Synpcc7942_0480 0.82 +0.8 465,352 + Synpcc7942_0480 0.84 -3.0 465,360 - Synpcc7942_0480 0.84 +2.5 465,384 + Synpcc7942_0480 0.86 -2.1 465,384 + Synpcc7942_0480 0.86 +0.1 465,392 - Synpcc7942_0480 0.86 +2.1 465,392 - Synpcc7942_0480 0.86 -1.8 465,392 - Synpcc7942_0480 0.86 +1.3 465,392 - Synpcc7942_0480 0.86 -1.6 465,404 - Synpcc7942_0480 0.87 -1.8 465,414 - Synpcc7942_0480 0.87 +0.6 465,460 - Synpcc7942_0480 0.90 +1.3 465,461 - +1.3 465,463 + +2.8 465,479 - +0.9 465,508 - +2.6 465,508 - +2.0 465,508 - -0.4 465,509 - -1.8 465,509 - -2.9 465,517 + +0.4 465,519 + +1.9 465,532 + +0.1 465,535 + +1.7 465,537 + +1.1 465,538 - +0.1 465,545 - +2.7 465,559 + -0.8 465,564 + +1.0 465,569 + +0.5 465,572 - -1.0 465,583 - +3.7 465,587 + +2.6 465,596 + -1.6 465,646 - +1.1 465,665 - +2.0 465,666 + +0.9 465,668 + +0.4 465,668 + -1.6 465,668 + -1.6 465,668 + -2.0 465,668 + -0.7 465,668 + +1.7 465,676 - -2.7 465,739 + +1.8 465,743 + +1.3 465,743 + -1.4 465,743 - -0.2 465,750 + +1.2 465,750 + +1.8 465,750 + -0.8 465,758 - +2.1 465,758 - -0.5 465,758 - +3.6 465,781 - +2.4 465,800 + +1.7 465,800 + +1.2 465,801 + -2.5 465,801 + +2.1 465,808 - -2.1 465,808 - -3.6 465,809 - -2.0 465,809 - +0.5 465,809 - -2.4 465,809 - +1.2 465,814 + -0.2 465,816 - +1.3 465,820 + -2.8 465,821 - +1.8 465,828 + Synpcc7942_0481 0.10 -1.8 465,828 + Synpcc7942_0481 0.10 +0.9 465,828 - Synpcc7942_0481 0.10 +1.3 465,828 - Synpcc7942_0481 0.10 +0.4 465,831 - Synpcc7942_0481 0.11 +1.7 465,833 + Synpcc7942_0481 0.11 -2.1 465,837 + Synpcc7942_0481 0.11 -1.4 465,845 - Synpcc7942_0481 0.12 -1.4 465,879 - Synpcc7942_0481 0.15 -1.8 465,902 + Synpcc7942_0481 0.17 +1.9 465,902 + Synpcc7942_0481 0.17 -0.8 465,910 - Synpcc7942_0481 0.18 +0.0 465,910 - Synpcc7942_0481 0.18 +2.3 465,980 + -2.3 466,004 - Synpcc7942_0481 0.26 -0.8 466,043 + Synpcc7942_0481 0.30 -1.0 466,086 - Synpcc7942_0481 0.33 +2.7 466,147 - Synpcc7942_0481 0.39 +0.7 466,177 - Synpcc7942_0481 0.42 -2.6 466,217 + Synpcc7942_0481 0.45 -0.6 466,225 - Synpcc7942_0481 0.46 +0.9 466,228 + Synpcc7942_0481 0.46 -1.5 466,277 - Synpcc7942_0481 0.51 -1.0 466,282 - Synpcc7942_0481 0.51 -0.4 466,305 - Synpcc7942_0481 0.53 +0.4 466,318 + Synpcc7942_0481 0.54 +2.6 466,318 + Synpcc7942_0481 0.54 +0.7 466,341 - Synpcc7942_0481 0.56 -0.2 466,436 + Synpcc7942_0481 0.65 +0.8 466,626 + Synpcc7942_0481 0.82 +1.1 466,634 - Synpcc7942_0481 0.83 +2.7 466,637 + Synpcc7942_0481 0.83 +1.1 466,645 - Synpcc7942_0481 0.84 -0.0 466,715 - Synpcc7942_0481 0.90 -2.3 466,731 - -0.3 466,756 + -0.1 466,809 + +2.2 466,847 - +0.3 466,887 - +1.0 466,892 - +2.0 466,909 + -1.6 466,909 + +3.2 466,915 - -1.0 466,922 - +2.1 466,930 - +1.9 466,967 - -2.1 467,001 + +0.9 467,015 - -1.4 467,015 - -1.8
Or see this region's nucleotide sequence