Experiment: Control plate grown in contant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0353 and bgl are separated by 399 nucleotides bgl and rbfA overlap by 4 nucleotides rbfA and ycf33 are separated by 51 nucleotides
Synpcc7942_0353: Synpcc7942_0353 - Na+-dependent transporter-like, at 345,470 to 346,432
_0353
Synpcc7942_0354: bgl - Beta-glucosidase-related glycosidase-like, at 346,832 to 348,460
bgl
Synpcc7942_0355: rbfA - ribosome-binding factor A, at 348,457 to 348,870
rbfA
Synpcc7942_0356: ycf33 - conserved hypothetical protein YCF33, at 348,922 to 349,146
ycf33
Position (kb) 346
347
348
349 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 345.836 kb on - strand, within Synpcc7942_0353 at 345.836 kb on - strand, within Synpcc7942_0353 at 345.870 kb on + strand, within Synpcc7942_0353 at 345.909 kb on - strand at 345.933 kb on - strand, within Synpcc7942_0353 at 345.946 kb on - strand, within Synpcc7942_0353 at 345.947 kb on + strand, within Synpcc7942_0353 at 345.947 kb on + strand, within Synpcc7942_0353 at 345.962 kb on - strand, within Synpcc7942_0353 at 345.967 kb on + strand, within Synpcc7942_0353 at 345.976 kb on - strand, within Synpcc7942_0353 at 345.987 kb on + strand, within Synpcc7942_0353 at 345.992 kb on + strand, within Synpcc7942_0353 at 345.992 kb on + strand, within Synpcc7942_0353 at 345.995 kb on - strand, within Synpcc7942_0353 at 346.000 kb on + strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.000 kb on - strand, within Synpcc7942_0353 at 346.002 kb on + strand, within Synpcc7942_0353 at 346.002 kb on + strand, within Synpcc7942_0353 at 346.008 kb on - strand, within Synpcc7942_0353 at 346.010 kb on - strand, within Synpcc7942_0353 at 346.026 kb on + strand, within Synpcc7942_0353 at 346.043 kb on + strand, within Synpcc7942_0353 at 346.062 kb on + strand, within Synpcc7942_0353 at 346.072 kb on + strand, within Synpcc7942_0353 at 346.106 kb on - strand, within Synpcc7942_0353 at 346.106 kb on - strand, within Synpcc7942_0353 at 346.199 kb on + strand, within Synpcc7942_0353 at 346.275 kb on - strand, within Synpcc7942_0353 at 346.294 kb on + strand, within Synpcc7942_0353 at 346.390 kb on - strand at 346.489 kb on + strand at 346.627 kb on - strand at 346.627 kb on - strand at 346.639 kb on - strand at 346.809 kb on + strand at 346.824 kb on - strand at 346.901 kb on + strand at 346.909 kb on - strand at 346.909 kb on - strand at 346.974 kb on + strand at 347.007 kb on + strand, within bgl at 347.019 kb on - strand, within bgl at 347.123 kb on + strand, within bgl at 347.123 kb on + strand, within bgl at 347.227 kb on - strand, within bgl at 347.268 kb on + strand, within bgl at 347.275 kb on - strand, within bgl at 347.276 kb on - strand, within bgl at 347.276 kb on - strand, within bgl at 347.279 kb on + strand, within bgl at 347.347 kb on + strand, within bgl at 347.521 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.567 kb on + strand, within bgl at 347.644 kb on + strand, within bgl at 347.651 kb on + strand, within bgl at 347.655 kb on + strand, within bgl at 347.673 kb on - strand, within bgl at 347.801 kb on + strand, within bgl at 347.878 kb on - strand, within bgl at 347.909 kb on - strand, within bgl at 347.927 kb on - strand, within bgl at 347.985 kb on - strand, within bgl at 348.018 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.090 kb on + strand, within bgl at 348.099 kb on - strand, within bgl at 348.102 kb on - strand, within bgl at 348.112 kb on - strand, within bgl at 348.120 kb on - strand, within bgl at 348.123 kb on + strand, within bgl at 348.131 kb on - strand, within bgl at 348.141 kb on - strand, within bgl at 348.149 kb on + strand, within bgl at 348.157 kb on - strand, within bgl at 348.165 kb on + strand, within bgl at 348.178 kb on - strand, within bgl at 348.178 kb on - strand at 348.183 kb on - strand, within bgl at 348.201 kb on + strand at 348.245 kb on + strand, within bgl at 348.273 kb on - strand, within bgl at 348.344 kb on - strand at 348.344 kb on - strand at 348.349 kb on - strand at 348.381 kb on + strand at 348.393 kb on + strand at 348.403 kb on + strand at 348.415 kb on + strand at 348.415 kb on + strand at 348.422 kb on + strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.427 kb on + strand at 348.435 kb on - strand at 348.468 kb on - strand at 348.473 kb on - strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.489 kb on + strand at 348.496 kb on - strand at 348.573 kb on - strand, within rbfA at 348.625 kb on + strand, within rbfA at 348.633 kb on - strand, within rbfA at 348.656 kb on + strand, within rbfA at 348.693 kb on - strand, within rbfA at 348.744 kb on - strand, within rbfA at 348.758 kb on + strand, within rbfA at 348.761 kb on - strand, within rbfA at 348.763 kb on + strand, within rbfA at 348.768 kb on + strand, within rbfA at 348.771 kb on - strand, within rbfA at 348.797 kb on - strand, within rbfA at 348.824 kb on + strand, within rbfA at 348.845 kb on + strand at 348.867 kb on + strand at 348.892 kb on + strand at 348.907 kb on - strand at 348.910 kb on - strand at 348.914 kb on + strand at 348.917 kb on - strand at 348.935 kb on - strand at 348.953 kb on - strand, within ycf33 at 348.965 kb on - strand at 348.965 kb on - strand, within ycf33 at 349.164 kb on + strand at 349.206 kb on + strand at 349.206 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.252 kb on + strand at 349.279 kb on + strand at 349.279 kb on + strand at 349.287 kb on - strand at 349.301 kb on + strand at 349.344 kb on - strand at 349.344 kb on - strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.371 kb on - strand at 349.377 kb on - strand at 349.384 kb on + strand at 349.453 kb on - strand at 349.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control plate grown in contant light remove 345,836 - Synpcc7942_0353 0.38 -3.0 345,836 - Synpcc7942_0353 0.38 +1.5 345,870 + Synpcc7942_0353 0.42 +0.7 345,909 - +2.5 345,933 - Synpcc7942_0353 0.48 -0.1 345,946 - Synpcc7942_0353 0.49 -1.1 345,947 + Synpcc7942_0353 0.50 +0.7 345,947 + Synpcc7942_0353 0.50 -0.3 345,962 - Synpcc7942_0353 0.51 +3.1 345,967 + Synpcc7942_0353 0.52 -0.9 345,976 - Synpcc7942_0353 0.53 +1.9 345,987 + Synpcc7942_0353 0.54 +1.8 345,992 + Synpcc7942_0353 0.54 +1.0 345,992 + Synpcc7942_0353 0.54 -3.0 345,995 - Synpcc7942_0353 0.55 -0.2 346,000 + Synpcc7942_0353 0.55 +0.0 346,000 - Synpcc7942_0353 0.55 +1.7 346,000 - Synpcc7942_0353 0.55 +0.5 346,000 - Synpcc7942_0353 0.55 -2.4 346,000 - Synpcc7942_0353 0.55 +1.1 346,002 + Synpcc7942_0353 0.55 +0.9 346,002 + Synpcc7942_0353 0.55 +1.0 346,008 - Synpcc7942_0353 0.56 -2.9 346,010 - Synpcc7942_0353 0.56 -1.8 346,026 + Synpcc7942_0353 0.58 +2.3 346,043 + Synpcc7942_0353 0.60 +1.2 346,062 + Synpcc7942_0353 0.61 +1.1 346,072 + Synpcc7942_0353 0.63 +0.3 346,106 - Synpcc7942_0353 0.66 +0.8 346,106 - Synpcc7942_0353 0.66 +0.3 346,199 + Synpcc7942_0353 0.76 +1.7 346,275 - Synpcc7942_0353 0.84 +1.5 346,294 + Synpcc7942_0353 0.86 -0.1 346,390 - +1.8 346,489 + -0.5 346,627 - -1.4 346,627 - -1.3 346,639 - -0.1 346,809 + -2.4 346,824 - +3.2 346,901 + +0.9 346,909 - -0.4 346,909 - +1.3 346,974 + +3.5 347,007 + bgl Synpcc7942_0354 0.11 -1.5 347,019 - bgl Synpcc7942_0354 0.11 -0.6 347,123 + bgl Synpcc7942_0354 0.18 -1.5 347,123 + bgl Synpcc7942_0354 0.18 +1.0 347,227 - bgl Synpcc7942_0354 0.24 +0.9 347,268 + bgl Synpcc7942_0354 0.27 +2.2 347,275 - bgl Synpcc7942_0354 0.27 +0.6 347,276 - bgl Synpcc7942_0354 0.27 -1.7 347,276 - bgl Synpcc7942_0354 0.27 -2.3 347,279 + bgl Synpcc7942_0354 0.27 +1.1 347,347 + bgl Synpcc7942_0354 0.32 -3.0 347,521 + bgl Synpcc7942_0354 0.42 +1.8 347,567 + bgl Synpcc7942_0354 0.45 -0.8 347,567 + bgl Synpcc7942_0354 0.45 -3.0 347,567 + bgl Synpcc7942_0354 0.45 +0.8 347,644 + bgl Synpcc7942_0354 0.50 +0.5 347,651 + bgl Synpcc7942_0354 0.50 -2.8 347,655 + bgl Synpcc7942_0354 0.51 -2.5 347,673 - bgl Synpcc7942_0354 0.52 -1.1 347,801 + bgl Synpcc7942_0354 0.59 +1.6 347,878 - bgl Synpcc7942_0354 0.64 -0.6 347,909 - bgl Synpcc7942_0354 0.66 -0.7 347,927 - bgl Synpcc7942_0354 0.67 +0.1 347,985 - bgl Synpcc7942_0354 0.71 +0.8 348,018 + bgl Synpcc7942_0354 0.73 -2.1 348,035 + bgl Synpcc7942_0354 0.74 +1.3 348,035 + bgl Synpcc7942_0354 0.74 +2.2 348,090 + bgl Synpcc7942_0354 0.77 -1.4 348,099 - bgl Synpcc7942_0354 0.78 -2.7 348,102 - bgl Synpcc7942_0354 0.78 -3.8 348,112 - bgl Synpcc7942_0354 0.79 -0.2 348,120 - bgl Synpcc7942_0354 0.79 -1.0 348,123 + bgl Synpcc7942_0354 0.79 -1.7 348,131 - bgl Synpcc7942_0354 0.80 +0.4 348,141 - bgl Synpcc7942_0354 0.80 -1.7 348,149 + bgl Synpcc7942_0354 0.81 +3.0 348,157 - bgl Synpcc7942_0354 0.81 +0.8 348,165 + bgl Synpcc7942_0354 0.82 -2.4 348,178 - bgl Synpcc7942_0354 0.83 -0.2 348,178 - -1.7 348,183 - bgl Synpcc7942_0354 0.83 -2.2 348,201 + -0.1 348,245 + bgl Synpcc7942_0354 0.87 -1.0 348,273 - bgl Synpcc7942_0354 0.88 -0.7 348,344 - -0.1 348,344 - -0.5 348,349 - -2.1 348,381 + +1.1 348,393 + +0.9 348,403 + -0.1 348,415 + -2.4 348,415 + -4.7 348,422 + +1.6 348,423 - +1.0 348,423 - -1.6 348,423 - +1.2 348,427 + -2.7 348,435 - +0.3 348,468 - -2.4 348,473 - +1.6 348,475 + -0.1 348,475 + -1.8 348,475 + +0.6 348,489 + -2.8 348,496 - +0.2 348,573 - rbfA Synpcc7942_0355 0.28 +0.9 348,625 + rbfA Synpcc7942_0355 0.41 -3.3 348,633 - rbfA Synpcc7942_0355 0.43 -3.0 348,656 + rbfA Synpcc7942_0355 0.48 -1.4 348,693 - rbfA Synpcc7942_0355 0.57 +0.3 348,744 - rbfA Synpcc7942_0355 0.69 -3.3 348,758 + rbfA Synpcc7942_0355 0.73 -1.4 348,761 - rbfA Synpcc7942_0355 0.73 -1.8 348,763 + rbfA Synpcc7942_0355 0.74 -3.3 348,768 + rbfA Synpcc7942_0355 0.75 +2.3 348,771 - rbfA Synpcc7942_0355 0.76 -1.4 348,797 - rbfA Synpcc7942_0355 0.82 -1.5 348,824 + rbfA Synpcc7942_0355 0.89 -3.0 348,845 + -1.5 348,867 + +0.8 348,892 + -1.8 348,907 - -0.9 348,910 - +0.1 348,914 + +0.2 348,917 - +0.2 348,935 - +1.1 348,953 - ycf33 Synpcc7942_0356 0.14 -0.0 348,965 - -1.7 348,965 - ycf33 Synpcc7942_0356 0.19 -3.4 349,164 + +1.1 349,206 + -2.3 349,206 + +1.2 349,220 + +0.1 349,220 + -0.5 349,220 + -1.0 349,220 + -2.3 349,220 + -2.4 349,220 + -2.4 349,220 + +1.2 349,220 + +0.3 349,228 - -0.6 349,228 - -1.7 349,228 - -1.7 349,228 - -1.5 349,228 - -2.6 349,228 - -0.1 349,228 - +2.6 349,228 - +0.9 349,228 - +1.6 349,228 - +0.2 349,228 - -2.1 349,252 + -2.3 349,279 + -1.6 349,279 + -0.9 349,287 - +2.0 349,301 + -1.5 349,344 - +0.9 349,344 - +1.2 349,369 + +0.9 349,369 + +1.5 349,369 + +2.3 349,371 - +1.1 349,377 - -3.4 349,384 + +0.7 349,453 - +0.8 349,460 - +2.3
Or see this region's nucleotide sequence