Experiment: Control plate grown in contant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccmK3 and ccmK4 are separated by 44 nucleotides ccmK4 and Synpcc7942_0286 are separated by 84 nucleotides Synpcc7942_0286 and Synpcc7942_0287 are separated by 54 nucleotides Synpcc7942_0287 and glmU are separated by 11 nucleotides
Synpcc7942_0284: ccmK3 - carbon dioxide concentrating mechanism protein CcmK, at 280,701 to 281,009
ccmK3
Synpcc7942_0285: ccmK4 - carbon dioxide concentrating mechanism protein CcmK, at 281,054 to 281,395
ccmK4
Synpcc7942_0286: Synpcc7942_0286 - hypothetical protein, at 281,480 to 281,842
_0286
Synpcc7942_0287: Synpcc7942_0287 - hypothetical protein, at 281,897 to 282,592
_0287
Synpcc7942_0288: glmU - glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase, at 282,604 to 283,962
glmU
Position (kb) 281
282
283 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 280.968 kb on - strand, within ccmK3 at 281.396 kb on + strand at 281.396 kb on + strand at 281.449 kb on + strand at 281.506 kb on + strand at 281.567 kb on + strand, within Synpcc7942_0286 at 281.567 kb on + strand, within Synpcc7942_0286 at 281.630 kb on - strand, within Synpcc7942_0286 at 281.633 kb on + strand, within Synpcc7942_0286 at 281.646 kb on - strand, within Synpcc7942_0286 at 281.725 kb on + strand, within Synpcc7942_0286 at 281.785 kb on - strand, within Synpcc7942_0286 at 281.818 kb on - strand at 281.861 kb on - strand at 281.872 kb on + strand at 281.887 kb on - strand at 281.894 kb on + strand at 281.894 kb on + strand at 281.908 kb on + strand at 281.908 kb on - strand at 281.909 kb on - strand at 281.916 kb on - strand at 281.919 kb on + strand at 281.955 kb on - strand at 281.965 kb on - strand at 281.968 kb on + strand, within Synpcc7942_0287 at 282.012 kb on + strand, within Synpcc7942_0287 at 282.020 kb on - strand, within Synpcc7942_0287 at 282.340 kb on - strand, within Synpcc7942_0287 at 282.454 kb on + strand, within Synpcc7942_0287 at 282.610 kb on - strand at 282.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control plate grown in contant light remove 280,968 - ccmK3 Synpcc7942_0284 0.86 +0.9 281,396 + -3.0 281,396 + +1.6 281,449 + -0.8 281,506 + -2.8 281,567 + Synpcc7942_0286 0.24 +1.3 281,567 + Synpcc7942_0286 0.24 +1.3 281,630 - Synpcc7942_0286 0.41 -0.8 281,633 + Synpcc7942_0286 0.42 +0.2 281,646 - Synpcc7942_0286 0.46 +1.2 281,725 + Synpcc7942_0286 0.67 -2.8 281,785 - Synpcc7942_0286 0.84 +1.1 281,818 - +2.1 281,861 - +1.2 281,872 + +1.2 281,887 - +1.2 281,894 + -1.1 281,894 + +1.1 281,908 + +1.1 281,908 - -1.0 281,909 - -2.0 281,916 - +0.7 281,919 + +1.0 281,955 - +1.8 281,965 - -2.6 281,968 + Synpcc7942_0287 0.10 +0.8 282,012 + Synpcc7942_0287 0.17 -2.1 282,020 - Synpcc7942_0287 0.18 -3.0 282,340 - Synpcc7942_0287 0.64 -3.8 282,454 + Synpcc7942_0287 0.80 -1.1 282,610 - -2.0 282,621 - +2.2
Or see this region's nucleotide sequence