Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0179

Experiment: Control plate grown in contant light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0178 and Synpcc7942_0179 are separated by 270 nucleotidesSynpcc7942_0179 and Synpcc7942_0180 are separated by 454 nucleotides Synpcc7942_0178: Synpcc7942_0178 - ATPase, at 175,494 to 176,471 _0178 Synpcc7942_0179: Synpcc7942_0179 - Secretion chaperone CsaA, at 176,742 to 177,095 _0179 Synpcc7942_0180: Synpcc7942_0180 - hypothetical protein, at 177,550 to 178,422 _0180 Position (kb) 176 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 175.757 kb on + strand, within Synpcc7942_0178at 175.778 kb on - strand, within Synpcc7942_0178at 175.793 kb on - strand, within Synpcc7942_0178at 175.800 kb on - strand, within Synpcc7942_0178at 175.812 kb on - strand, within Synpcc7942_0178at 175.825 kb on + strand, within Synpcc7942_0178at 175.825 kb on + strand, within Synpcc7942_0178at 175.833 kb on - strand, within Synpcc7942_0178at 175.857 kb on + strand, within Synpcc7942_0178at 175.913 kb on + strand, within Synpcc7942_0178at 175.924 kb on + strand, within Synpcc7942_0178at 175.925 kb on + strand, within Synpcc7942_0178at 175.925 kb on + strand, within Synpcc7942_0178at 175.933 kb on - strand, within Synpcc7942_0178at 175.933 kb on - strand, within Synpcc7942_0178at 175.949 kb on + strand, within Synpcc7942_0178at 175.977 kb on + strand, within Synpcc7942_0178at 175.987 kb on - strand, within Synpcc7942_0178at 175.992 kb on - strand, within Synpcc7942_0178at 176.009 kb on - strand, within Synpcc7942_0178at 176.050 kb on + strand, within Synpcc7942_0178at 176.097 kb on + strand, within Synpcc7942_0178at 176.105 kb on - strand, within Synpcc7942_0178at 176.110 kb on + strand, within Synpcc7942_0178at 176.126 kb on + strand, within Synpcc7942_0178at 176.127 kb on + strand, within Synpcc7942_0178at 176.127 kb on + strand, within Synpcc7942_0178at 176.134 kb on - strand, within Synpcc7942_0178at 176.134 kb on - strand, within Synpcc7942_0178at 176.135 kb on - strand, within Synpcc7942_0178at 176.135 kb on - strand, within Synpcc7942_0178at 176.198 kb on - strand, within Synpcc7942_0178at 176.216 kb on + strand, within Synpcc7942_0178at 176.221 kb on + strand, within Synpcc7942_0178at 176.251 kb on + strand, within Synpcc7942_0178at 176.255 kb on + strand, within Synpcc7942_0178at 176.264 kb on - strand, within Synpcc7942_0178at 176.264 kb on - strand, within Synpcc7942_0178at 176.340 kb on - strand, within Synpcc7942_0178at 176.362 kb on + strand, within Synpcc7942_0178at 176.423 kb on - strandat 176.427 kb on - strandat 176.437 kb on + strandat 176.443 kb on + strandat 176.444 kb on - strandat 176.445 kb on - strandat 176.445 kb on - strandat 176.451 kb on - strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.504 kb on + strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.512 kb on - strandat 176.520 kb on - strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.531 kb on + strandat 176.539 kb on - strandat 176.539 kb on - strandat 176.539 kb on - strandat 176.558 kb on - strandat 176.608 kb on + strandat 176.623 kb on - strandat 176.627 kb on + strandat 176.628 kb on - strandat 176.628 kb on - strandat 176.630 kb on - strandat 176.798 kb on - strand, within Synpcc7942_0179at 176.803 kb on - strand, within Synpcc7942_0179at 176.845 kb on + strand, within Synpcc7942_0179at 176.853 kb on - strand, within Synpcc7942_0179at 176.859 kb on - strand, within Synpcc7942_0179at 176.929 kb on - strand, within Synpcc7942_0179at 176.929 kb on - strand, within Synpcc7942_0179at 176.942 kb on - strand, within Synpcc7942_0179at 176.953 kb on + strand, within Synpcc7942_0179at 176.953 kb on + strand, within Synpcc7942_0179at 177.063 kb on - strandat 177.072 kb on - strandat 177.316 kb on + strandat 177.657 kb on + strand, within Synpcc7942_0180at 177.665 kb on - strand, within Synpcc7942_0180at 177.697 kb on + strand, within Synpcc7942_0180

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Per-strain Table

Position Strand Gene LocusTag Fraction Control plate grown in contant light
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175,757 + Synpcc7942_0178 0.27 +2.1
175,778 - Synpcc7942_0178 0.29 -1.0
175,793 - Synpcc7942_0178 0.31 -1.1
175,800 - Synpcc7942_0178 0.31 +2.7
175,812 - Synpcc7942_0178 0.33 -0.2
175,825 + Synpcc7942_0178 0.34 +0.1
175,825 + Synpcc7942_0178 0.34 -2.4
175,833 - Synpcc7942_0178 0.35 -3.1
175,857 + Synpcc7942_0178 0.37 +2.2
175,913 + Synpcc7942_0178 0.43 +2.0
175,924 + Synpcc7942_0178 0.44 -2.8
175,925 + Synpcc7942_0178 0.44 +1.7
175,925 + Synpcc7942_0178 0.44 -0.5
175,933 - Synpcc7942_0178 0.45 -2.9
175,933 - Synpcc7942_0178 0.45 -1.7
175,949 + Synpcc7942_0178 0.47 +1.7
175,977 + Synpcc7942_0178 0.49 +1.1
175,987 - Synpcc7942_0178 0.50 -1.9
175,992 - Synpcc7942_0178 0.51 +1.8
176,009 - Synpcc7942_0178 0.53 -3.6
176,050 + Synpcc7942_0178 0.57 -2.7
176,097 + Synpcc7942_0178 0.62 +0.6
176,105 - Synpcc7942_0178 0.62 -1.7
176,110 + Synpcc7942_0178 0.63 -1.3
176,126 + Synpcc7942_0178 0.65 -2.3
176,127 + Synpcc7942_0178 0.65 -2.2
176,127 + Synpcc7942_0178 0.65 -1.9
176,134 - Synpcc7942_0178 0.65 +0.6
176,134 - Synpcc7942_0178 0.65 +0.7
176,135 - Synpcc7942_0178 0.66 +1.4
176,135 - Synpcc7942_0178 0.66 -2.8
176,198 - Synpcc7942_0178 0.72 -2.8
176,216 + Synpcc7942_0178 0.74 -2.4
176,221 + Synpcc7942_0178 0.74 +0.8
176,251 + Synpcc7942_0178 0.77 -0.9
176,255 + Synpcc7942_0178 0.78 +2.0
176,264 - Synpcc7942_0178 0.79 +0.5
176,264 - Synpcc7942_0178 0.79 -0.0
176,340 - Synpcc7942_0178 0.87 +3.2
176,362 + Synpcc7942_0178 0.89 -0.3
176,423 - +1.7
176,427 - -0.0
176,437 + -3.5
176,443 + +1.8
176,444 - -1.1
176,445 - -2.2
176,445 - -1.3
176,451 - +1.2
176,504 + -2.0
176,504 + +2.4
176,504 + +1.2
176,504 + -1.1
176,504 + -2.1
176,512 - -1.7
176,512 - -2.2
176,512 - -0.7
176,512 - -1.1
176,512 - +1.0
176,512 - -1.6
176,520 - +1.4
176,531 + +1.8
176,531 + -1.3
176,531 + -3.1
176,531 + -1.8
176,531 + -1.5
176,539 - +2.4
176,539 - +1.1
176,539 - -1.2
176,558 - -3.4
176,608 + +2.0
176,623 - -1.3
176,627 + -2.2
176,628 - +2.1
176,628 - +1.9
176,630 - +2.9
176,798 - Synpcc7942_0179 0.16 -1.7
176,803 - Synpcc7942_0179 0.17 -2.5
176,845 + Synpcc7942_0179 0.29 -2.9
176,853 - Synpcc7942_0179 0.31 -0.5
176,859 - Synpcc7942_0179 0.33 -1.8
176,929 - Synpcc7942_0179 0.53 +1.9
176,929 - Synpcc7942_0179 0.53 +0.7
176,942 - Synpcc7942_0179 0.56 -1.8
176,953 + Synpcc7942_0179 0.60 -1.1
176,953 + Synpcc7942_0179 0.60 +0.0
177,063 - +2.5
177,072 - +1.1
177,316 + -0.5
177,657 + Synpcc7942_0180 0.12 -2.5
177,665 - Synpcc7942_0180 0.13 -2.7
177,697 + Synpcc7942_0180 0.17 -0.3

Or see this region's nucleotide sequence