Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0176

Experiment: Control plate grown in contant light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0174 and Synpcc7942_0175 overlap by 4 nucleotidesSynpcc7942_0175 and Synpcc7942_0176 are separated by 112 nucleotidesSynpcc7942_0176 and Synpcc7942_0177 overlap by 4 nucleotidesSynpcc7942_0177 and Synpcc7942_0178 overlap by 4 nucleotides Synpcc7942_0174: Synpcc7942_0174 - hypothetical protein, at 173,111 to 173,989 _0174 Synpcc7942_0175: Synpcc7942_0175 - hypothetical protein, at 173,986 to 174,198 _0175 Synpcc7942_0176: Synpcc7942_0176 - hypothetical protein, at 174,311 to 174,712 _0176 Synpcc7942_0177: Synpcc7942_0177 - ABC-type uncharacterized transport system permease component-like, at 174,709 to 175,497 _0177 Synpcc7942_0178: Synpcc7942_0178 - ATPase, at 175,494 to 176,471 _0178 Position (kb) 174 175Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 173.311 kb on - strand, within Synpcc7942_0174at 173.311 kb on - strand, within Synpcc7942_0174at 173.316 kb on + strand, within Synpcc7942_0174at 173.319 kb on - strand, within Synpcc7942_0174at 173.324 kb on - strand, within Synpcc7942_0174at 173.345 kb on + strand, within Synpcc7942_0174at 173.345 kb on + strand, within Synpcc7942_0174at 173.345 kb on + strand, within Synpcc7942_0174at 173.345 kb on + strand, within Synpcc7942_0174at 173.353 kb on - strand, within Synpcc7942_0174at 173.353 kb on - strand, within Synpcc7942_0174at 173.353 kb on - strand, within Synpcc7942_0174at 173.357 kb on + strand, within Synpcc7942_0174at 173.357 kb on + strand, within Synpcc7942_0174at 173.370 kb on - strand, within Synpcc7942_0174at 173.432 kb on + strand, within Synpcc7942_0174at 173.433 kb on + strand, within Synpcc7942_0174at 173.441 kb on - strand, within Synpcc7942_0174at 173.441 kb on - strand, within Synpcc7942_0174at 173.467 kb on + strand, within Synpcc7942_0174at 173.472 kb on + strand, within Synpcc7942_0174at 173.479 kb on + strand, within Synpcc7942_0174at 173.479 kb on + strand, within Synpcc7942_0174at 173.479 kb on + strand, within Synpcc7942_0174at 173.479 kb on + strand, within Synpcc7942_0174at 173.479 kb on + strand, within Synpcc7942_0174at 173.479 kb on + strand, within Synpcc7942_0174at 173.487 kb on - strand, within Synpcc7942_0174at 173.487 kb on - strand, within Synpcc7942_0174at 173.495 kb on - strand, within Synpcc7942_0174at 173.495 kb on - strand, within Synpcc7942_0174at 173.534 kb on + strand, within Synpcc7942_0174at 173.593 kb on + strand, within Synpcc7942_0174at 173.597 kb on + strand, within Synpcc7942_0174at 173.610 kb on + strand, within Synpcc7942_0174at 173.628 kb on + strand, within Synpcc7942_0174at 173.628 kb on + strand, within Synpcc7942_0174at 173.672 kb on + strand, within Synpcc7942_0174at 173.672 kb on + strand, within Synpcc7942_0174at 173.672 kb on + strand, within Synpcc7942_0174at 173.672 kb on + strand, within Synpcc7942_0174at 173.680 kb on - strand, within Synpcc7942_0174at 173.715 kb on + strand, within Synpcc7942_0174at 173.790 kb on + strand, within Synpcc7942_0174at 173.790 kb on + strand, within Synpcc7942_0174at 173.807 kb on + strand, within Synpcc7942_0174at 173.813 kb on - strand, within Synpcc7942_0174at 173.825 kb on - strand, within Synpcc7942_0174at 173.846 kb on - strand, within Synpcc7942_0174at 173.871 kb on + strand, within Synpcc7942_0174at 173.873 kb on + strand, within Synpcc7942_0174at 173.905 kb on - strandat 173.960 kb on + strandat 174.191 kb on + strandat 174.217 kb on - strandat 174.219 kb on + strandat 174.230 kb on + strandat 174.230 kb on + strandat 174.336 kb on - strandat 174.362 kb on - strand, within Synpcc7942_0176at 174.377 kb on - strand, within Synpcc7942_0176at 174.398 kb on + strand, within Synpcc7942_0176at 174.422 kb on - strand, within Synpcc7942_0176at 174.444 kb on + strand, within Synpcc7942_0176at 174.449 kb on + strand, within Synpcc7942_0176at 174.521 kb on + strand, within Synpcc7942_0176at 174.533 kb on - strand, within Synpcc7942_0176at 174.540 kb on + strand, within Synpcc7942_0176at 174.554 kb on + strand, within Synpcc7942_0176at 174.556 kb on - strand, within Synpcc7942_0176at 174.575 kb on + strand, within Synpcc7942_0176at 174.625 kb on + strand, within Synpcc7942_0176at 174.626 kb on + strand, within Synpcc7942_0176at 174.637 kb on + strand, within Synpcc7942_0176at 174.664 kb on - strand, within Synpcc7942_0176at 174.666 kb on + strand, within Synpcc7942_0176at 174.666 kb on + strand, within Synpcc7942_0176at 174.671 kb on + strandat 174.671 kb on + strand, within Synpcc7942_0176at 174.679 kb on - strandat 174.679 kb on - strandat 174.730 kb on - strandat 174.767 kb on + strandat 174.788 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.812 kb on - strand, within Synpcc7942_0177at 174.832 kb on - strand, within Synpcc7942_0177at 174.832 kb on - strand, within Synpcc7942_0177at 174.860 kb on + strand, within Synpcc7942_0177at 174.873 kb on - strand, within Synpcc7942_0177at 174.903 kb on - strand, within Synpcc7942_0177at 174.910 kb on + strand, within Synpcc7942_0177at 174.916 kb on + strand, within Synpcc7942_0177at 174.944 kb on + strand, within Synpcc7942_0177at 174.956 kb on + strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.964 kb on - strand, within Synpcc7942_0177at 174.966 kb on + strand, within Synpcc7942_0177at 174.974 kb on + strand, within Synpcc7942_0177at 174.982 kb on - strand, within Synpcc7942_0177at 175.005 kb on + strand, within Synpcc7942_0177at 175.005 kb on + strand, within Synpcc7942_0177at 175.020 kb on + strand, within Synpcc7942_0177at 175.035 kb on + strand, within Synpcc7942_0177at 175.093 kb on + strand, within Synpcc7942_0177at 175.093 kb on + strand, within Synpcc7942_0177at 175.109 kb on - strand, within Synpcc7942_0177at 175.125 kb on + strand, within Synpcc7942_0177at 175.127 kb on + strand, within Synpcc7942_0177at 175.127 kb on + strand, within Synpcc7942_0177at 175.135 kb on - strand, within Synpcc7942_0177at 175.208 kb on + strand, within Synpcc7942_0177at 175.234 kb on + strand, within Synpcc7942_0177at 175.273 kb on + strand, within Synpcc7942_0177at 175.284 kb on + strand, within Synpcc7942_0177at 175.292 kb on - strand, within Synpcc7942_0177at 175.317 kb on + strand, within Synpcc7942_0177at 175.346 kb on - strand, within Synpcc7942_0177at 175.346 kb on - strand, within Synpcc7942_0177at 175.362 kb on + strand, within Synpcc7942_0177at 175.365 kb on + strandat 175.370 kb on - strand, within Synpcc7942_0177at 175.397 kb on + strand, within Synpcc7942_0177at 175.415 kb on - strand, within Synpcc7942_0177at 175.432 kb on + strandat 175.457 kb on + strandat 175.465 kb on - strandat 175.465 kb on - strandat 175.465 kb on - strandat 175.467 kb on + strandat 175.475 kb on - strandat 175.489 kb on - strandat 175.500 kb on - strandat 175.505 kb on + strandat 175.535 kb on - strandat 175.549 kb on + strandat 175.557 kb on - strandat 175.582 kb on + strandat 175.598 kb on + strand, within Synpcc7942_0178at 175.653 kb on + strand, within Synpcc7942_0178at 175.664 kb on + strand, within Synpcc7942_0178at 175.691 kb on + strand, within Synpcc7942_0178at 175.709 kb on - strand, within Synpcc7942_0178at 175.710 kb on + strand, within Synpcc7942_0178

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Per-strain Table

Position Strand Gene LocusTag Fraction Control plate grown in contant light
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173,311 - Synpcc7942_0174 0.23 -1.5
173,311 - Synpcc7942_0174 0.23 -0.9
173,316 + Synpcc7942_0174 0.23 -1.3
173,319 - Synpcc7942_0174 0.24 +2.9
173,324 - Synpcc7942_0174 0.24 +0.4
173,345 + Synpcc7942_0174 0.27 +0.7
173,345 + Synpcc7942_0174 0.27 +2.1
173,345 + Synpcc7942_0174 0.27 +1.3
173,345 + Synpcc7942_0174 0.27 -2.8
173,353 - Synpcc7942_0174 0.28 +0.8
173,353 - Synpcc7942_0174 0.28 +0.4
173,353 - Synpcc7942_0174 0.28 -0.9
173,357 + Synpcc7942_0174 0.28 +0.7
173,357 + Synpcc7942_0174 0.28 +1.0
173,370 - Synpcc7942_0174 0.29 +2.8
173,432 + Synpcc7942_0174 0.37 -3.2
173,433 + Synpcc7942_0174 0.37 -0.2
173,441 - Synpcc7942_0174 0.38 -0.8
173,441 - Synpcc7942_0174 0.38 +0.7
173,467 + Synpcc7942_0174 0.41 -2.1
173,472 + Synpcc7942_0174 0.41 +3.4
173,479 + Synpcc7942_0174 0.42 +0.0
173,479 + Synpcc7942_0174 0.42 -1.0
173,479 + Synpcc7942_0174 0.42 -1.6
173,479 + Synpcc7942_0174 0.42 -1.1
173,479 + Synpcc7942_0174 0.42 +0.5
173,479 + Synpcc7942_0174 0.42 +1.2
173,487 - Synpcc7942_0174 0.43 -0.6
173,487 - Synpcc7942_0174 0.43 -1.9
173,495 - Synpcc7942_0174 0.44 -1.9
173,495 - Synpcc7942_0174 0.44 -1.1
173,534 + Synpcc7942_0174 0.48 -1.1
173,593 + Synpcc7942_0174 0.55 +1.0
173,597 + Synpcc7942_0174 0.55 -1.7
173,610 + Synpcc7942_0174 0.57 +1.0
173,628 + Synpcc7942_0174 0.59 -0.9
173,628 + Synpcc7942_0174 0.59 +0.9
173,672 + Synpcc7942_0174 0.64 +0.7
173,672 + Synpcc7942_0174 0.64 -0.6
173,672 + Synpcc7942_0174 0.64 +2.4
173,672 + Synpcc7942_0174 0.64 -0.8
173,680 - Synpcc7942_0174 0.65 +1.2
173,715 + Synpcc7942_0174 0.69 -1.9
173,790 + Synpcc7942_0174 0.77 -1.0
173,790 + Synpcc7942_0174 0.77 +0.3
173,807 + Synpcc7942_0174 0.79 -0.6
173,813 - Synpcc7942_0174 0.80 -1.5
173,825 - Synpcc7942_0174 0.81 -1.3
173,846 - Synpcc7942_0174 0.84 -2.1
173,871 + Synpcc7942_0174 0.86 -3.4
173,873 + Synpcc7942_0174 0.87 +1.3
173,905 - +2.7
173,960 + -1.8
174,191 + +0.7
174,217 - +1.7
174,219 + -1.3
174,230 + -3.3
174,230 + +0.7
174,336 - +1.1
174,362 - Synpcc7942_0176 0.13 +0.3
174,377 - Synpcc7942_0176 0.16 +1.9
174,398 + Synpcc7942_0176 0.22 +1.2
174,422 - Synpcc7942_0176 0.28 +1.0
174,444 + Synpcc7942_0176 0.33 -2.4
174,449 + Synpcc7942_0176 0.34 -2.5
174,521 + Synpcc7942_0176 0.52 +0.7
174,533 - Synpcc7942_0176 0.55 +1.3
174,540 + Synpcc7942_0176 0.57 +2.1
174,554 + Synpcc7942_0176 0.60 +2.5
174,556 - Synpcc7942_0176 0.61 +1.1
174,575 + Synpcc7942_0176 0.66 +1.4
174,625 + Synpcc7942_0176 0.78 -3.7
174,626 + Synpcc7942_0176 0.78 -2.0
174,637 + Synpcc7942_0176 0.81 -1.5
174,664 - Synpcc7942_0176 0.88 +2.8
174,666 + Synpcc7942_0176 0.88 -2.9
174,666 + Synpcc7942_0176 0.88 +2.0
174,671 + -0.1
174,671 + Synpcc7942_0176 0.90 -1.1
174,679 - -0.1
174,679 - -1.9
174,730 - -1.9
174,767 + +1.6
174,788 - Synpcc7942_0177 0.10 -0.3
174,812 - Synpcc7942_0177 0.13 +1.6
174,812 - Synpcc7942_0177 0.13 +1.4
174,812 - Synpcc7942_0177 0.13 +1.5
174,832 - Synpcc7942_0177 0.16 +2.9
174,832 - Synpcc7942_0177 0.16 +0.3
174,860 + Synpcc7942_0177 0.19 -1.9
174,873 - Synpcc7942_0177 0.21 +1.4
174,903 - Synpcc7942_0177 0.25 +3.5
174,910 + Synpcc7942_0177 0.25 +1.2
174,916 + Synpcc7942_0177 0.26 +1.2
174,944 + Synpcc7942_0177 0.30 +4.3
174,956 + Synpcc7942_0177 0.31 -2.5
174,964 - Synpcc7942_0177 0.32 +1.9
174,964 - Synpcc7942_0177 0.32 +1.2
174,964 - Synpcc7942_0177 0.32 -1.8
174,966 + Synpcc7942_0177 0.33 +0.8
174,974 + Synpcc7942_0177 0.34 +1.0
174,982 - Synpcc7942_0177 0.35 -0.7
175,005 + Synpcc7942_0177 0.38 +0.9
175,005 + Synpcc7942_0177 0.38 -1.4
175,020 + Synpcc7942_0177 0.39 +2.3
175,035 + Synpcc7942_0177 0.41 -3.3
175,093 + Synpcc7942_0177 0.49 +1.8
175,093 + Synpcc7942_0177 0.49 -1.1
175,109 - Synpcc7942_0177 0.51 -1.1
175,125 + Synpcc7942_0177 0.53 +1.6
175,127 + Synpcc7942_0177 0.53 +1.4
175,127 + Synpcc7942_0177 0.53 -1.4
175,135 - Synpcc7942_0177 0.54 -0.5
175,208 + Synpcc7942_0177 0.63 +1.4
175,234 + Synpcc7942_0177 0.67 +2.4
175,273 + Synpcc7942_0177 0.71 -2.6
175,284 + Synpcc7942_0177 0.73 +1.5
175,292 - Synpcc7942_0177 0.74 +0.6
175,317 + Synpcc7942_0177 0.77 +0.8
175,346 - Synpcc7942_0177 0.81 -1.3
175,346 - Synpcc7942_0177 0.81 -1.9
175,362 + Synpcc7942_0177 0.83 +2.0
175,365 + +2.0
175,370 - Synpcc7942_0177 0.84 +1.5
175,397 + Synpcc7942_0177 0.87 +1.1
175,415 - Synpcc7942_0177 0.89 -0.1
175,432 + -0.7
175,457 + -1.9
175,465 - +0.1
175,465 - -1.9
175,465 - +0.3
175,467 + +1.3
175,475 - +2.5
175,489 - +3.2
175,500 - +1.5
175,505 + -1.6
175,535 - -1.9
175,549 + +4.0
175,557 - -2.1
175,582 + -1.0
175,598 + Synpcc7942_0178 0.11 -0.6
175,653 + Synpcc7942_0178 0.16 +0.6
175,664 + Synpcc7942_0178 0.17 +1.4
175,691 + Synpcc7942_0178 0.20 +1.8
175,709 - Synpcc7942_0178 0.22 +2.4
175,710 + Synpcc7942_0178 0.22 -2.3

Or see this region's nucleotide sequence