Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS03765

Experiment: R2A pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS03755 and LRK54_RS03760 are separated by 64 nucleotidesLRK54_RS03760 and LRK54_RS03765 are separated by 263 nucleotidesLRK54_RS03765 and LRK54_RS03770 are separated by 67 nucleotidesLRK54_RS03770 and LRK54_RS03775 are separated by 80 nucleotidesLRK54_RS03775 and LRK54_RS03780 are separated by 96 nucleotides LRK54_RS03755: LRK54_RS03755 - hypothetical protein, at 794,075 to 794,854 _RS03755 LRK54_RS03760: LRK54_RS03760 - DUF2321 domain-containing protein, at 794,919 to 795,368 _RS03760 LRK54_RS03765: LRK54_RS03765 - hypothetical protein, at 795,632 to 795,958 _RS03765 LRK54_RS03770: LRK54_RS03770 - hypothetical protein, at 796,026 to 796,481 _RS03770 LRK54_RS03775: LRK54_RS03775 - hypothetical protein, at 796,562 to 796,843 _RS03775 LRK54_RS03780: LRK54_RS03780 - hypothetical protein, at 796,940 to 797,416 _RS03780 Position (kb) 795 796Strain fitness (log2 ratio) -2 -1 0 1 2at 794.643 kb on - strand, within LRK54_RS03755at 794.659 kb on + strand, within LRK54_RS03755at 794.663 kb on + strand, within LRK54_RS03755at 794.667 kb on + strand, within LRK54_RS03755at 794.668 kb on - strand, within LRK54_RS03755at 794.746 kb on + strand, within LRK54_RS03755at 794.746 kb on + strand, within LRK54_RS03755at 794.746 kb on + strand, within LRK54_RS03755at 794.747 kb on - strand, within LRK54_RS03755at 794.904 kb on + strandat 794.904 kb on + strandat 794.905 kb on - strandat 794.905 kb on - strandat 794.920 kb on + strandat 794.938 kb on - strandat 794.960 kb on + strandat 794.961 kb on - strandat 795.045 kb on + strand, within LRK54_RS03760at 795.045 kb on + strand, within LRK54_RS03760at 795.045 kb on + strand, within LRK54_RS03760at 795.046 kb on - strand, within LRK54_RS03760at 795.046 kb on - strand, within LRK54_RS03760at 795.063 kb on - strand, within LRK54_RS03760at 795.076 kb on - strand, within LRK54_RS03760at 795.081 kb on + strand, within LRK54_RS03760at 795.082 kb on - strand, within LRK54_RS03760at 795.117 kb on + strand, within LRK54_RS03760at 795.161 kb on + strand, within LRK54_RS03760at 795.162 kb on - strand, within LRK54_RS03760at 795.194 kb on + strand, within LRK54_RS03760at 795.195 kb on - strand, within LRK54_RS03760at 795.195 kb on - strand, within LRK54_RS03760at 795.196 kb on + strand, within LRK54_RS03760at 795.253 kb on + strand, within LRK54_RS03760at 795.253 kb on + strand, within LRK54_RS03760at 795.254 kb on - strand, within LRK54_RS03760at 795.254 kb on - strand, within LRK54_RS03760at 795.265 kb on - strand, within LRK54_RS03760at 795.265 kb on - strand, within LRK54_RS03760at 795.294 kb on - strand, within LRK54_RS03760at 795.345 kb on + strandat 795.346 kb on - strandat 795.360 kb on - strandat 795.410 kb on + strandat 795.410 kb on + strandat 795.444 kb on - strandat 795.476 kb on + strandat 795.477 kb on - strandat 795.513 kb on - strandat 795.513 kb on - strandat 795.577 kb on - strandat 795.596 kb on + strandat 795.609 kb on - strandat 795.629 kb on + strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.630 kb on - strandat 795.682 kb on - strand, within LRK54_RS03765at 795.888 kb on - strand, within LRK54_RS03765at 795.909 kb on + strand, within LRK54_RS03765at 795.910 kb on - strand, within LRK54_RS03765at 795.930 kb on + strandat 795.931 kb on - strandat 795.931 kb on - strandat 795.958 kb on + strandat 795.959 kb on - strandat 795.959 kb on - strandat 796.027 kb on + strandat 796.082 kb on - strand, within LRK54_RS03770at 796.082 kb on - strand, within LRK54_RS03770at 796.142 kb on + strand, within LRK54_RS03770at 796.173 kb on + strand, within LRK54_RS03770at 796.173 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.191 kb on + strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.192 kb on - strand, within LRK54_RS03770at 796.200 kb on + strand, within LRK54_RS03770at 796.200 kb on + strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.201 kb on - strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.245 kb on + strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.246 kb on - strand, within LRK54_RS03770at 796.247 kb on + strand, within LRK54_RS03770at 796.247 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.317 kb on + strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.318 kb on - strand, within LRK54_RS03770at 796.368 kb on + strand, within LRK54_RS03770at 796.368 kb on + strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.369 kb on - strand, within LRK54_RS03770at 796.377 kb on + strand, within LRK54_RS03770at 796.378 kb on - strand, within LRK54_RS03770at 796.405 kb on + strand, within LRK54_RS03770at 796.405 kb on + strand, within LRK54_RS03770at 796.406 kb on - strand, within LRK54_RS03770at 796.406 kb on - strand, within LRK54_RS03770at 796.465 kb on + strandat 796.465 kb on + strandat 796.466 kb on - strandat 796.466 kb on - strandat 796.481 kb on + strandat 796.482 kb on - strandat 796.501 kb on - strandat 796.563 kb on + strandat 796.564 kb on - strandat 796.597 kb on + strand, within LRK54_RS03775at 796.635 kb on - strand, within LRK54_RS03775at 796.692 kb on + strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.693 kb on - strand, within LRK54_RS03775at 796.696 kb on + strand, within LRK54_RS03775at 796.754 kb on + strand, within LRK54_RS03775at 796.754 kb on + strand, within LRK54_RS03775at 796.758 kb on + strand, within LRK54_RS03775at 796.759 kb on - strand, within LRK54_RS03775at 796.759 kb on - strand, within LRK54_RS03775at 796.781 kb on + strand, within LRK54_RS03775at 796.782 kb on - strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.814 kb on + strand, within LRK54_RS03775at 796.815 kb on - strandat 796.815 kb on - strandat 796.815 kb on - strandat 796.821 kb on - strandat 796.821 kb on - strandat 796.858 kb on + strandat 796.859 kb on - strandat 796.904 kb on + strandat 796.938 kb on - strandat 796.941 kb on + strandat 796.949 kb on + strandat 796.949 kb on + strandat 796.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A pH7
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794,643 - LRK54_RS03755 0.73 -0.2
794,659 + LRK54_RS03755 0.75 +0.4
794,663 + LRK54_RS03755 0.75 +0.7
794,667 + LRK54_RS03755 0.76 +0.5
794,668 - LRK54_RS03755 0.76 -1.4
794,746 + LRK54_RS03755 0.86 -0.5
794,746 + LRK54_RS03755 0.86 +0.7
794,746 + LRK54_RS03755 0.86 -1.1
794,747 - LRK54_RS03755 0.86 +0.7
794,904 + -0.3
794,904 + -2.3
794,905 - -2.3
794,905 - -0.8
794,920 + -0.3
794,938 - -0.3
794,960 + -0.9
794,961 - +0.1
795,045 + LRK54_RS03760 0.28 -0.1
795,045 + LRK54_RS03760 0.28 -1.4
795,045 + LRK54_RS03760 0.28 -0.3
795,046 - LRK54_RS03760 0.28 +0.6
795,046 - LRK54_RS03760 0.28 +0.2
795,063 - LRK54_RS03760 0.32 -0.3
795,076 - LRK54_RS03760 0.35 +0.4
795,081 + LRK54_RS03760 0.36 -0.7
795,082 - LRK54_RS03760 0.36 +1.0
795,117 + LRK54_RS03760 0.44 -0.4
795,161 + LRK54_RS03760 0.54 -0.6
795,162 - LRK54_RS03760 0.54 -0.6
795,194 + LRK54_RS03760 0.61 -1.3
795,195 - LRK54_RS03760 0.61 -1.8
795,195 - LRK54_RS03760 0.61 +1.1
795,196 + LRK54_RS03760 0.62 -0.8
795,253 + LRK54_RS03760 0.74 +2.1
795,253 + LRK54_RS03760 0.74 -0.7
795,254 - LRK54_RS03760 0.74 -1.3
795,254 - LRK54_RS03760 0.74 -0.0
795,265 - LRK54_RS03760 0.77 +1.2
795,265 - LRK54_RS03760 0.77 -0.2
795,294 - LRK54_RS03760 0.83 +0.3
795,345 + -0.3
795,346 - +0.7
795,360 - -1.1
795,410 + +0.7
795,410 + +0.3
795,444 - +2.6
795,476 + -1.0
795,477 - -0.7
795,513 - -1.4
795,513 - -0.8
795,577 - -0.6
795,596 + +0.2
795,609 - +0.6
795,629 + -1.5
795,630 - -0.2
795,630 - +0.1
795,630 - +0.2
795,630 - -2.0
795,630 - +0.4
795,630 - +0.1
795,682 - LRK54_RS03765 0.15 +0.1
795,888 - LRK54_RS03765 0.78 -0.3
795,909 + LRK54_RS03765 0.85 +0.1
795,910 - LRK54_RS03765 0.85 -0.3
795,930 + -1.0
795,931 - -1.4
795,931 - +0.6
795,958 + +0.7
795,959 - +1.2
795,959 - -0.9
796,027 + -0.6
796,082 - LRK54_RS03770 0.12 -0.4
796,082 - LRK54_RS03770 0.12 +0.3
796,142 + LRK54_RS03770 0.25 -0.5
796,173 + LRK54_RS03770 0.32 +0.8
796,173 + LRK54_RS03770 0.32 +1.0
796,191 + LRK54_RS03770 0.36 -0.4
796,191 + LRK54_RS03770 0.36 +0.3
796,191 + LRK54_RS03770 0.36 +0.2
796,191 + LRK54_RS03770 0.36 +0.7
796,191 + LRK54_RS03770 0.36 +1.0
796,191 + LRK54_RS03770 0.36 -0.2
796,191 + LRK54_RS03770 0.36 -2.0
796,191 + LRK54_RS03770 0.36 +0.2
796,191 + LRK54_RS03770 0.36 -0.9
796,192 - LRK54_RS03770 0.36 +0.3
796,192 - LRK54_RS03770 0.36 +0.6
796,192 - LRK54_RS03770 0.36 -0.0
796,192 - LRK54_RS03770 0.36 -1.8
796,192 - LRK54_RS03770 0.36 -0.8
796,192 - LRK54_RS03770 0.36 +1.0
796,192 - LRK54_RS03770 0.36 -0.4
796,192 - LRK54_RS03770 0.36 +1.0
796,192 - LRK54_RS03770 0.36 -0.0
796,192 - LRK54_RS03770 0.36 -0.8
796,192 - LRK54_RS03770 0.36 -0.4
796,200 + LRK54_RS03770 0.38 -0.6
796,200 + LRK54_RS03770 0.38 -1.5
796,201 - LRK54_RS03770 0.38 -0.2
796,201 - LRK54_RS03770 0.38 -0.2
796,201 - LRK54_RS03770 0.38 -0.3
796,201 - LRK54_RS03770 0.38 +0.4
796,245 + LRK54_RS03770 0.48 -0.9
796,245 + LRK54_RS03770 0.48 -2.0
796,245 + LRK54_RS03770 0.48 -0.7
796,245 + LRK54_RS03770 0.48 +0.1
796,245 + LRK54_RS03770 0.48 +1.6
796,245 + LRK54_RS03770 0.48 -0.1
796,245 + LRK54_RS03770 0.48 +1.1
796,245 + LRK54_RS03770 0.48 -0.4
796,245 + LRK54_RS03770 0.48 +1.2
796,245 + LRK54_RS03770 0.48 -1.5
796,245 + LRK54_RS03770 0.48 -1.3
796,245 + LRK54_RS03770 0.48 +0.6
796,246 - LRK54_RS03770 0.48 -1.5
796,246 - LRK54_RS03770 0.48 +1.0
796,246 - LRK54_RS03770 0.48 -1.3
796,246 - LRK54_RS03770 0.48 -0.1
796,246 - LRK54_RS03770 0.48 -0.9
796,247 + LRK54_RS03770 0.48 -0.6
796,247 + LRK54_RS03770 0.48 +0.1
796,317 + LRK54_RS03770 0.64 -1.5
796,317 + LRK54_RS03770 0.64 +1.0
796,317 + LRK54_RS03770 0.64 -0.3
796,318 - LRK54_RS03770 0.64 -0.6
796,318 - LRK54_RS03770 0.64 -0.7
796,318 - LRK54_RS03770 0.64 -0.6
796,318 - LRK54_RS03770 0.64 +0.6
796,368 + LRK54_RS03770 0.75 -0.3
796,368 + LRK54_RS03770 0.75 -0.1
796,369 - LRK54_RS03770 0.75 -0.7
796,369 - LRK54_RS03770 0.75 -0.6
796,369 - LRK54_RS03770 0.75 +0.4
796,377 + LRK54_RS03770 0.77 -0.3
796,378 - LRK54_RS03770 0.77 +0.2
796,405 + LRK54_RS03770 0.83 -1.1
796,405 + LRK54_RS03770 0.83 -0.1
796,406 - LRK54_RS03770 0.83 -1.0
796,406 - LRK54_RS03770 0.83 -0.4
796,465 + -1.1
796,465 + -1.2
796,466 - +0.7
796,466 - -0.6
796,481 + -0.1
796,482 - -0.4
796,501 - -0.7
796,563 + +0.4
796,564 - -0.6
796,597 + LRK54_RS03775 0.12 +0.8
796,635 - LRK54_RS03775 0.26 +0.1
796,692 + LRK54_RS03775 0.46 -1.8
796,693 - LRK54_RS03775 0.46 +0.4
796,693 - LRK54_RS03775 0.46 -1.3
796,693 - LRK54_RS03775 0.46 +0.5
796,696 + LRK54_RS03775 0.48 -0.4
796,754 + LRK54_RS03775 0.68 -0.0
796,754 + LRK54_RS03775 0.68 -0.4
796,758 + LRK54_RS03775 0.70 -0.3
796,759 - LRK54_RS03775 0.70 -0.6
796,759 - LRK54_RS03775 0.70 -1.3
796,781 + LRK54_RS03775 0.78 +0.1
796,782 - LRK54_RS03775 0.78 -0.0
796,814 + LRK54_RS03775 0.89 -0.0
796,814 + LRK54_RS03775 0.89 -1.4
796,814 + LRK54_RS03775 0.89 +1.0
796,815 - -0.3
796,815 - -0.3
796,815 - -2.2
796,821 - -0.4
796,821 - +2.6
796,858 + -1.3
796,859 - -0.5
796,904 + -0.9
796,938 - -0.8
796,941 + +0.1
796,949 + -0.3
796,949 + -0.9
796,949 + -0.2

Or see this region's nucleotide sequence