Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4716

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4714 and Ac3H11_4715 are separated by 47 nucleotidesAc3H11_4715 and Ac3H11_4716 are separated by 124 nucleotidesAc3H11_4716 and Ac3H11_4717 are separated by 21 nucleotidesAc3H11_4717 and Ac3H11_4718 are separated by 94 nucleotides Ac3H11_4714 - Uncharacterized ABC transporter, periplasmic component YrbD, at 25,625 to 26,113 _4714 Ac3H11_4715 - VacJ family lipoprotein, at 26,161 to 26,910 _4715 Ac3H11_4716 - Toluene tolerance precursor, at 27,035 to 27,700 _4716 Ac3H11_4717 - sulfate transporter/antisigma-factor antagonist STAS, at 27,722 to 27,994 _4717 Ac3H11_4718 - Methionine ABC transporter ATP-binding protein, at 28,089 to 29,027 _4718 Position (kb) 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 26.060 kb on + strand, within Ac3H11_4714at 26.060 kb on + strand, within Ac3H11_4714at 26.127 kb on + strandat 26.127 kb on + strandat 26.127 kb on + strandat 26.127 kb on + strandat 26.127 kb on + strandat 26.127 kb on + strandat 26.127 kb on + strandat 26.128 kb on - strandat 26.128 kb on - strandat 26.266 kb on + strand, within Ac3H11_4715at 26.266 kb on + strand, within Ac3H11_4715at 26.266 kb on + strand, within Ac3H11_4715at 26.267 kb on - strand, within Ac3H11_4715at 26.267 kb on - strand, within Ac3H11_4715at 26.267 kb on - strand, within Ac3H11_4715at 26.267 kb on - strand, within Ac3H11_4715at 26.267 kb on - strand, within Ac3H11_4715at 26.267 kb on - strand, within Ac3H11_4715at 26.335 kb on + strand, within Ac3H11_4715at 26.335 kb on + strand, within Ac3H11_4715at 26.335 kb on + strand, within Ac3H11_4715at 26.335 kb on + strand, within Ac3H11_4715at 26.336 kb on - strand, within Ac3H11_4715at 26.336 kb on - strand, within Ac3H11_4715at 26.336 kb on - strand, within Ac3H11_4715at 26.336 kb on - strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.345 kb on + strand, within Ac3H11_4715at 26.346 kb on - strand, within Ac3H11_4715at 26.346 kb on - strand, within Ac3H11_4715at 26.346 kb on - strand, within Ac3H11_4715at 26.424 kb on - strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.454 kb on + strand, within Ac3H11_4715at 26.455 kb on - strand, within Ac3H11_4715at 26.455 kb on - strand, within Ac3H11_4715at 26.455 kb on - strand, within Ac3H11_4715at 26.536 kb on + strand, within Ac3H11_4715at 26.536 kb on + strand, within Ac3H11_4715at 26.536 kb on + strand, within Ac3H11_4715at 26.537 kb on - strand, within Ac3H11_4715at 26.567 kb on - strand, within Ac3H11_4715at 26.590 kb on + strand, within Ac3H11_4715at 26.591 kb on - strand, within Ac3H11_4715at 26.591 kb on - strand, within Ac3H11_4715at 26.674 kb on + strand, within Ac3H11_4715at 26.674 kb on + strand, within Ac3H11_4715at 26.674 kb on + strand, within Ac3H11_4715at 26.674 kb on + strand, within Ac3H11_4715at 26.674 kb on + strand, within Ac3H11_4715at 26.674 kb on + strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.675 kb on - strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.707 kb on + strand, within Ac3H11_4715at 26.708 kb on - strand, within Ac3H11_4715at 26.708 kb on - strand, within Ac3H11_4715at 26.708 kb on - strand, within Ac3H11_4715at 26.708 kb on - strand, within Ac3H11_4715at 26.708 kb on - strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.785 kb on + strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.786 kb on - strand, within Ac3H11_4715at 26.835 kb on + strand, within Ac3H11_4715at 26.835 kb on + strand, within Ac3H11_4715at 26.835 kb on + strand, within Ac3H11_4715at 26.835 kb on + strand, within Ac3H11_4715at 26.835 kb on + strand, within Ac3H11_4715at 26.835 kb on + strand, within Ac3H11_4715at 26.836 kb on - strandat 26.836 kb on - strandat 26.836 kb on - strandat 27.064 kb on + strandat 27.064 kb on + strandat 27.064 kb on + strandat 27.064 kb on + strandat 27.065 kb on - strandat 27.065 kb on - strandat 27.065 kb on - strandat 27.178 kb on + strand, within Ac3H11_4716at 27.178 kb on + strand, within Ac3H11_4716at 27.179 kb on - strand, within Ac3H11_4716at 27.179 kb on - strand, within Ac3H11_4716at 27.179 kb on - strand, within Ac3H11_4716at 27.179 kb on - strand, within Ac3H11_4716at 27.378 kb on + strand, within Ac3H11_4716at 27.378 kb on + strand, within Ac3H11_4716at 27.379 kb on - strand, within Ac3H11_4716at 27.379 kb on - strand, within Ac3H11_4716at 27.379 kb on - strand, within Ac3H11_4716at 27.379 kb on - strand, within Ac3H11_4716at 27.379 kb on - strand, within Ac3H11_4716at 27.386 kb on + strand, within Ac3H11_4716at 27.386 kb on + strand, within Ac3H11_4716at 27.386 kb on + strand, within Ac3H11_4716at 27.386 kb on + strand, within Ac3H11_4716at 27.386 kb on + strand, within Ac3H11_4716at 27.387 kb on - strand, within Ac3H11_4716at 27.387 kb on - strand, within Ac3H11_4716at 27.515 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.560 kb on + strand, within Ac3H11_4716at 27.561 kb on - strand, within Ac3H11_4716at 27.561 kb on - strand, within Ac3H11_4716at 27.561 kb on - strand, within Ac3H11_4716at 27.561 kb on - strand, within Ac3H11_4716at 27.561 kb on - strand, within Ac3H11_4716at 27.729 kb on + strandat 27.729 kb on + strandat 27.745 kb on + strandat 27.745 kb on + strandat 27.745 kb on + strandat 27.746 kb on - strandat 27.746 kb on - strandat 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.959 kb on + strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 27.960 kb on - strand, within Ac3H11_4717at 28.004 kb on - strandat 28.004 kb on - strandat 28.004 kb on - strandat 28.004 kb on - strandat 28.004 kb on - strandat 28.074 kb on - strandat 28.074 kb on - strandat 28.074 kb on - strandat 28.223 kb on + strand, within Ac3H11_4718at 28.311 kb on + strand, within Ac3H11_4718at 28.311 kb on + strand, within Ac3H11_4718at 28.311 kb on + strand, within Ac3H11_4718at 28.311 kb on + strand, within Ac3H11_4718at 28.311 kb on + strand, within Ac3H11_4718at 28.671 kb on + strand, within Ac3H11_4718at 28.671 kb on + strand, within Ac3H11_4718at 28.671 kb on + strand, within Ac3H11_4718

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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26,060 + Ac3H11_4714 0.89 +0.7
26,060 + Ac3H11_4714 0.89 -1.1
26,127 + -1.4
26,127 + -2.4
26,127 + -1.6
26,127 + -3.2
26,127 + -0.6
26,127 + -0.2
26,127 + -0.9
26,128 - -2.8
26,128 - -3.9
26,266 + Ac3H11_4715 0.14 -0.6
26,266 + Ac3H11_4715 0.14 -0.9
26,266 + Ac3H11_4715 0.14 -3.4
26,267 - Ac3H11_4715 0.14 -2.6
26,267 - Ac3H11_4715 0.14 -1.6
26,267 - Ac3H11_4715 0.14 -0.6
26,267 - Ac3H11_4715 0.14 -0.9
26,267 - Ac3H11_4715 0.14 -0.8
26,267 - Ac3H11_4715 0.14 -1.0
26,335 + Ac3H11_4715 0.23 -0.6
26,335 + Ac3H11_4715 0.23 -0.6
26,335 + Ac3H11_4715 0.23 -1.3
26,335 + Ac3H11_4715 0.23 -2.1
26,336 - Ac3H11_4715 0.23 +0.3
26,336 - Ac3H11_4715 0.23 -3.6
26,336 - Ac3H11_4715 0.23 +0.4
26,336 - Ac3H11_4715 0.23 -2.5
26,345 + Ac3H11_4715 0.25 -2.5
26,345 + Ac3H11_4715 0.25 -2.1
26,345 + Ac3H11_4715 0.25 -0.5
26,345 + Ac3H11_4715 0.25 -2.3
26,345 + Ac3H11_4715 0.25 -2.2
26,345 + Ac3H11_4715 0.25 -2.5
26,345 + Ac3H11_4715 0.25 -2.2
26,346 - Ac3H11_4715 0.25 -0.6
26,346 - Ac3H11_4715 0.25 -2.0
26,346 - Ac3H11_4715 0.25 -2.6
26,424 - Ac3H11_4715 0.35 -2.3
26,454 + Ac3H11_4715 0.39 -2.8
26,454 + Ac3H11_4715 0.39 -3.2
26,454 + Ac3H11_4715 0.39 -0.9
26,454 + Ac3H11_4715 0.39 -3.6
26,454 + Ac3H11_4715 0.39 -0.6
26,454 + Ac3H11_4715 0.39 +0.7
26,454 + Ac3H11_4715 0.39 -2.2
26,455 - Ac3H11_4715 0.39 -0.1
26,455 - Ac3H11_4715 0.39 -1.2
26,455 - Ac3H11_4715 0.39 -3.0
26,536 + Ac3H11_4715 0.50 -2.0
26,536 + Ac3H11_4715 0.50 +0.1
26,536 + Ac3H11_4715 0.50 -1.2
26,537 - Ac3H11_4715 0.50 -3.5
26,567 - Ac3H11_4715 0.54 -3.1
26,590 + Ac3H11_4715 0.57 -2.9
26,591 - Ac3H11_4715 0.57 -1.5
26,591 - Ac3H11_4715 0.57 -0.9
26,674 + Ac3H11_4715 0.68 +1.0
26,674 + Ac3H11_4715 0.68 -2.0
26,674 + Ac3H11_4715 0.68 -2.6
26,674 + Ac3H11_4715 0.68 -1.9
26,674 + Ac3H11_4715 0.68 -0.3
26,674 + Ac3H11_4715 0.68 -2.9
26,675 - Ac3H11_4715 0.69 -0.0
26,675 - Ac3H11_4715 0.69 -1.5
26,675 - Ac3H11_4715 0.69 -2.7
26,675 - Ac3H11_4715 0.69 -3.6
26,675 - Ac3H11_4715 0.69 -3.5
26,675 - Ac3H11_4715 0.69 -2.9
26,675 - Ac3H11_4715 0.69 +0.3
26,675 - Ac3H11_4715 0.69 -3.2
26,675 - Ac3H11_4715 0.69 -1.6
26,707 + Ac3H11_4715 0.73 -3.2
26,707 + Ac3H11_4715 0.73 -1.6
26,707 + Ac3H11_4715 0.73 -2.0
26,707 + Ac3H11_4715 0.73 -1.6
26,707 + Ac3H11_4715 0.73 +0.9
26,707 + Ac3H11_4715 0.73 -0.1
26,707 + Ac3H11_4715 0.73 -1.6
26,707 + Ac3H11_4715 0.73 -2.0
26,707 + Ac3H11_4715 0.73 -2.3
26,708 - Ac3H11_4715 0.73 +2.7
26,708 - Ac3H11_4715 0.73 -0.8
26,708 - Ac3H11_4715 0.73 -0.9
26,708 - Ac3H11_4715 0.73 -0.9
26,708 - Ac3H11_4715 0.73 -0.3
26,785 + Ac3H11_4715 0.83 -3.0
26,785 + Ac3H11_4715 0.83 +0.1
26,785 + Ac3H11_4715 0.83 -1.6
26,785 + Ac3H11_4715 0.83 -2.3
26,785 + Ac3H11_4715 0.83 -2.8
26,785 + Ac3H11_4715 0.83 -2.4
26,785 + Ac3H11_4715 0.83 -1.3
26,785 + Ac3H11_4715 0.83 -2.6
26,785 + Ac3H11_4715 0.83 -1.3
26,785 + Ac3H11_4715 0.83 -3.0
26,786 - Ac3H11_4715 0.83 +1.1
26,786 - Ac3H11_4715 0.83 -2.0
26,786 - Ac3H11_4715 0.83 +0.4
26,786 - Ac3H11_4715 0.83 -1.5
26,786 - Ac3H11_4715 0.83 -2.1
26,786 - Ac3H11_4715 0.83 +0.6
26,786 - Ac3H11_4715 0.83 -2.6
26,835 + Ac3H11_4715 0.90 -0.3
26,835 + Ac3H11_4715 0.90 -0.9
26,835 + Ac3H11_4715 0.90 -2.1
26,835 + Ac3H11_4715 0.90 -2.5
26,835 + Ac3H11_4715 0.90 -2.1
26,835 + Ac3H11_4715 0.90 +1.0
26,836 - -2.0
26,836 - -0.3
26,836 - -1.6
27,064 + -3.2
27,064 + -1.1
27,064 + -2.1
27,064 + +1.0
27,065 - +0.7
27,065 - -3.1
27,065 - -2.0
27,178 + Ac3H11_4716 0.21 -1.4
27,178 + Ac3H11_4716 0.21 -0.6
27,179 - Ac3H11_4716 0.22 -0.3
27,179 - Ac3H11_4716 0.22 -0.9
27,179 - Ac3H11_4716 0.22 +0.1
27,179 - Ac3H11_4716 0.22 -2.8
27,378 + Ac3H11_4716 0.52 +0.1
27,378 + Ac3H11_4716 0.52 -0.7
27,379 - Ac3H11_4716 0.52 -3.1
27,379 - Ac3H11_4716 0.52 -2.5
27,379 - Ac3H11_4716 0.52 -2.7
27,379 - Ac3H11_4716 0.52 -0.5
27,379 - Ac3H11_4716 0.52 -3.3
27,386 + Ac3H11_4716 0.53 -0.6
27,386 + Ac3H11_4716 0.53 -2.6
27,386 + Ac3H11_4716 0.53 -0.0
27,386 + Ac3H11_4716 0.53 -1.1
27,386 + Ac3H11_4716 0.53 -0.3
27,387 - Ac3H11_4716 0.53 -2.4
27,387 - Ac3H11_4716 0.53 -0.9
27,515 + Ac3H11_4716 0.72 +0.1
27,560 + Ac3H11_4716 0.79 -0.9
27,560 + Ac3H11_4716 0.79 -1.1
27,560 + Ac3H11_4716 0.79 -0.6
27,560 + Ac3H11_4716 0.79 -0.5
27,560 + Ac3H11_4716 0.79 -2.8
27,560 + Ac3H11_4716 0.79 -0.1
27,560 + Ac3H11_4716 0.79 -1.9
27,561 - Ac3H11_4716 0.79 -0.6
27,561 - Ac3H11_4716 0.79 -1.5
27,561 - Ac3H11_4716 0.79 -0.1
27,561 - Ac3H11_4716 0.79 -1.8
27,561 - Ac3H11_4716 0.79 -0.9
27,729 + +0.4
27,729 + -2.9
27,745 + -3.7
27,745 + +2.1
27,745 + +0.1
27,746 - +0.2
27,746 - -4.3
27,959 + Ac3H11_4717 0.87 -0.1
27,959 + Ac3H11_4717 0.87 +1.8
27,959 + Ac3H11_4717 0.87 -0.9
27,959 + Ac3H11_4717 0.87 +0.1
27,959 + Ac3H11_4717 0.87 -3.5
27,959 + Ac3H11_4717 0.87 -3.0
27,959 + Ac3H11_4717 0.87 -1.5
27,959 + Ac3H11_4717 0.87 -0.9
27,959 + Ac3H11_4717 0.87 -2.1
27,960 - Ac3H11_4717 0.87 -3.2
27,960 - Ac3H11_4717 0.87 -2.6
27,960 - Ac3H11_4717 0.87 -3.0
27,960 - Ac3H11_4717 0.87 -2.2
27,960 - Ac3H11_4717 0.87 -0.3
27,960 - Ac3H11_4717 0.87 -1.3
27,960 - Ac3H11_4717 0.87 +0.9
27,960 - Ac3H11_4717 0.87 -3.5
27,960 - Ac3H11_4717 0.87 +0.4
27,960 - Ac3H11_4717 0.87 -1.9
27,960 - Ac3H11_4717 0.87 -2.7
27,960 - Ac3H11_4717 0.87 -2.3
28,004 - -1.5
28,004 - +1.4
28,004 - +0.2
28,004 - +0.3
28,004 - -1.3
28,074 - +0.8
28,074 - -3.1
28,074 - -1.3
28,223 + Ac3H11_4718 0.14 +2.5
28,311 + Ac3H11_4718 0.24 +0.4
28,311 + Ac3H11_4718 0.24 +0.2
28,311 + Ac3H11_4718 0.24 +0.4
28,311 + Ac3H11_4718 0.24 +1.2
28,311 + Ac3H11_4718 0.24 -1.1
28,671 + Ac3H11_4718 0.62 -3.0
28,671 + Ac3H11_4718 0.62 +1.3
28,671 + Ac3H11_4718 0.62 +0.0

Or see this region's nucleotide sequence