Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4156

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4154 and Ac3H11_4155 are separated by 32 nucleotidesAc3H11_4155 and Ac3H11_4156 overlap by 4 nucleotidesAc3H11_4156 and Ac3H11_4157 are separated by 53 nucleotidesAc3H11_4157 and Ac3H11_4158 are separated by 121 nucleotides Ac3H11_4154 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 406,835 to 409,249 _4154 Ac3H11_4155 - Pirin-related protein, at 409,282 to 410,199 _4155 Ac3H11_4156 - OsmC family protein, at 410,196 to 410,603 _4156 Ac3H11_4157 - Multimeric flavodoxin WrbA, at 410,657 to 411,211 _4157 Ac3H11_4158 - putative membrane protein, at 411,333 to 411,746 _4158 Position (kb) 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.497 kb on + strand, within Ac3H11_4155at 409.497 kb on + strand, within Ac3H11_4155at 409.497 kb on + strand, within Ac3H11_4155at 409.551 kb on + strand, within Ac3H11_4155at 409.577 kb on + strand, within Ac3H11_4155at 409.577 kb on + strand, within Ac3H11_4155at 409.577 kb on + strand, within Ac3H11_4155at 409.578 kb on - strand, within Ac3H11_4155at 409.578 kb on - strand, within Ac3H11_4155at 409.578 kb on - strand, within Ac3H11_4155at 409.578 kb on - strand, within Ac3H11_4155at 409.646 kb on + strand, within Ac3H11_4155at 409.647 kb on - strand, within Ac3H11_4155at 409.647 kb on - strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.850 kb on + strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.851 kb on - strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.991 kb on + strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 409.992 kb on - strand, within Ac3H11_4155at 410.425 kb on + strand, within Ac3H11_4156at 410.425 kb on + strand, within Ac3H11_4156at 410.426 kb on - strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.470 kb on + strand, within Ac3H11_4156at 410.471 kb on - strand, within Ac3H11_4156at 410.471 kb on - strand, within Ac3H11_4156at 410.471 kb on - strand, within Ac3H11_4156at 410.658 kb on + strandat 410.658 kb on + strandat 410.659 kb on - strandat 410.659 kb on - strandat 410.889 kb on + strand, within Ac3H11_4157at 410.889 kb on + strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 410.890 kb on - strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.033 kb on + strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.034 kb on - strand, within Ac3H11_4157at 411.169 kb on + strandat 411.169 kb on + strandat 411.169 kb on + strandat 411.170 kb on - strandat 411.170 kb on - strandat 411.189 kb on + strandat 411.261 kb on + strandat 411.261 kb on + strandat 411.472 kb on + strand, within Ac3H11_4158at 411.473 kb on - strand, within Ac3H11_4158

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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409,497 + Ac3H11_4155 0.23 +0.4
409,497 + Ac3H11_4155 0.23 +0.8
409,497 + Ac3H11_4155 0.23 +1.8
409,551 + Ac3H11_4155 0.29 -0.1
409,577 + Ac3H11_4155 0.32 +0.3
409,577 + Ac3H11_4155 0.32 -2.5
409,577 + Ac3H11_4155 0.32 -2.1
409,578 - Ac3H11_4155 0.32 +1.1
409,578 - Ac3H11_4155 0.32 +0.3
409,578 - Ac3H11_4155 0.32 +2.5
409,578 - Ac3H11_4155 0.32 +1.5
409,646 + Ac3H11_4155 0.40 -2.1
409,647 - Ac3H11_4155 0.40 +0.9
409,647 - Ac3H11_4155 0.40 +0.4
409,850 + Ac3H11_4155 0.62 +0.8
409,850 + Ac3H11_4155 0.62 +0.3
409,850 + Ac3H11_4155 0.62 +0.6
409,850 + Ac3H11_4155 0.62 -0.2
409,850 + Ac3H11_4155 0.62 -0.8
409,850 + Ac3H11_4155 0.62 +0.0
409,851 - Ac3H11_4155 0.62 -3.5
409,851 - Ac3H11_4155 0.62 -1.4
409,851 - Ac3H11_4155 0.62 -0.8
409,851 - Ac3H11_4155 0.62 +0.7
409,991 + Ac3H11_4155 0.77 -2.5
409,991 + Ac3H11_4155 0.77 +0.3
409,991 + Ac3H11_4155 0.77 -0.4
409,991 + Ac3H11_4155 0.77 -1.0
409,991 + Ac3H11_4155 0.77 +1.0
409,991 + Ac3H11_4155 0.77 +0.8
409,991 + Ac3H11_4155 0.77 -0.4
409,992 - Ac3H11_4155 0.77 -2.0
409,992 - Ac3H11_4155 0.77 +0.6
409,992 - Ac3H11_4155 0.77 -1.1
409,992 - Ac3H11_4155 0.77 -0.4
409,992 - Ac3H11_4155 0.77 +0.7
409,992 - Ac3H11_4155 0.77 -1.4
409,992 - Ac3H11_4155 0.77 -1.9
410,425 + Ac3H11_4156 0.56 +0.7
410,425 + Ac3H11_4156 0.56 -0.4
410,426 - Ac3H11_4156 0.56 -1.0
410,470 + Ac3H11_4156 0.67 +0.0
410,470 + Ac3H11_4156 0.67 -0.5
410,470 + Ac3H11_4156 0.67 +2.0
410,470 + Ac3H11_4156 0.67 -1.4
410,470 + Ac3H11_4156 0.67 -0.5
410,470 + Ac3H11_4156 0.67 -1.0
410,470 + Ac3H11_4156 0.67 -0.1
410,471 - Ac3H11_4156 0.67 +0.3
410,471 - Ac3H11_4156 0.67 -0.2
410,471 - Ac3H11_4156 0.67 -0.4
410,658 + -1.4
410,658 + +1.9
410,659 - +0.2
410,659 - -0.5
410,889 + Ac3H11_4157 0.42 +0.0
410,889 + Ac3H11_4157 0.42 +1.4
410,890 - Ac3H11_4157 0.42 -0.6
410,890 - Ac3H11_4157 0.42 -0.1
410,890 - Ac3H11_4157 0.42 +0.0
410,890 - Ac3H11_4157 0.42 +0.3
411,033 + Ac3H11_4157 0.68 +0.5
411,033 + Ac3H11_4157 0.68 -0.5
411,033 + Ac3H11_4157 0.68 +0.4
411,033 + Ac3H11_4157 0.68 -0.0
411,033 + Ac3H11_4157 0.68 +1.0
411,033 + Ac3H11_4157 0.68 +0.5
411,033 + Ac3H11_4157 0.68 +1.5
411,033 + Ac3H11_4157 0.68 -0.2
411,033 + Ac3H11_4157 0.68 -1.5
411,033 + Ac3H11_4157 0.68 -0.6
411,033 + Ac3H11_4157 0.68 +1.1
411,033 + Ac3H11_4157 0.68 +1.5
411,033 + Ac3H11_4157 0.68 +0.8
411,033 + Ac3H11_4157 0.68 +0.2
411,033 + Ac3H11_4157 0.68 -0.5
411,034 - Ac3H11_4157 0.68 +0.8
411,034 - Ac3H11_4157 0.68 +1.5
411,034 - Ac3H11_4157 0.68 +0.4
411,034 - Ac3H11_4157 0.68 +0.3
411,034 - Ac3H11_4157 0.68 -0.8
411,034 - Ac3H11_4157 0.68 +1.4
411,034 - Ac3H11_4157 0.68 +1.0
411,034 - Ac3H11_4157 0.68 -1.0
411,034 - Ac3H11_4157 0.68 -0.5
411,034 - Ac3H11_4157 0.68 +0.5
411,034 - Ac3H11_4157 0.68 +0.8
411,169 + -1.0
411,169 + -0.9
411,169 + -0.3
411,170 - -0.2
411,170 - -0.3
411,189 + +2.5
411,261 + -0.5
411,261 + -0.1
411,472 + Ac3H11_4158 0.34 +0.9
411,473 - Ac3H11_4158 0.34 -1.4

Or see this region's nucleotide sequence