Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4060

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4059 and Ac3H11_4060 are separated by 241 nucleotidesAc3H11_4060 and Ac3H11_4061 are separated by 94 nucleotides Ac3H11_4059 - Lipid A export ATP-binding/permease protein MsbA, at 302,477 to 304,783 _4059 Ac3H11_4060 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 305,025 to 307,217 _4060 Ac3H11_4061 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 307,312 to 309,891 _4061 Position (kb) 305 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2 3at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.037 kb on + strand, within Ac3H11_4059at 304.038 kb on - strand, within Ac3H11_4059at 304.038 kb on - strand, within Ac3H11_4059at 304.038 kb on - strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.041 kb on + strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.042 kb on - strand, within Ac3H11_4059at 304.102 kb on - strand, within Ac3H11_4059at 304.102 kb on - strand, within Ac3H11_4059at 304.182 kb on + strand, within Ac3H11_4059at 304.182 kb on + strand, within Ac3H11_4059at 304.183 kb on - strand, within Ac3H11_4059at 304.183 kb on - strand, within Ac3H11_4059at 304.854 kb on - strandat 304.854 kb on - strandat 304.886 kb on + strandat 304.886 kb on + strandat 304.886 kb on + strandat 304.887 kb on - strandat 304.887 kb on - strandat 304.887 kb on - strandat 305.064 kb on + strandat 305.064 kb on + strandat 305.064 kb on + strandat 305.064 kb on + strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.065 kb on - strandat 305.081 kb on + strandat 305.082 kb on - strandat 305.082 kb on - strandat 305.091 kb on + strandat 305.092 kb on - strandat 305.139 kb on + strandat 305.139 kb on + strandat 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.345 kb on + strand, within Ac3H11_4060at 305.346 kb on - strand, within Ac3H11_4060at 305.365 kb on - strand, within Ac3H11_4060at 305.512 kb on - strand, within Ac3H11_4060at 305.512 kb on - strand, within Ac3H11_4060at 305.602 kb on + strand, within Ac3H11_4060at 305.602 kb on + strand, within Ac3H11_4060at 305.602 kb on + strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.603 kb on - strand, within Ac3H11_4060at 305.877 kb on + strand, within Ac3H11_4060at 305.877 kb on + strand, within Ac3H11_4060at 305.878 kb on - strand, within Ac3H11_4060at 305.878 kb on - strand, within Ac3H11_4060at 305.889 kb on + strand, within Ac3H11_4060at 306.073 kb on - strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.252 kb on + strand, within Ac3H11_4060at 306.253 kb on - strand, within Ac3H11_4060at 306.742 kb on - strand, within Ac3H11_4060at 306.742 kb on - strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.945 kb on + strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 306.946 kb on - strand, within Ac3H11_4060at 307.227 kb on - strandat 307.227 kb on - strandat 307.296 kb on + strandat 307.297 kb on - strandat 307.297 kb on - strandat 307.315 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.319 kb on + strandat 307.320 kb on - strandat 307.320 kb on - strandat 307.320 kb on - strandat 307.603 kb on + strand, within Ac3H11_4061at 307.603 kb on + strand, within Ac3H11_4061at 307.603 kb on + strand, within Ac3H11_4061at 307.604 kb on - strand, within Ac3H11_4061at 307.621 kb on + strand, within Ac3H11_4061at 307.621 kb on + strand, within Ac3H11_4061at 307.622 kb on - strand, within Ac3H11_4061at 307.657 kb on + strand, within Ac3H11_4061at 307.658 kb on - strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.116 kb on + strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061at 308.117 kb on - strand, within Ac3H11_4061

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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304,037 + Ac3H11_4059 0.68 +0.9
304,037 + Ac3H11_4059 0.68 +1.0
304,037 + Ac3H11_4059 0.68 -0.3
304,037 + Ac3H11_4059 0.68 +0.3
304,037 + Ac3H11_4059 0.68 +0.4
304,037 + Ac3H11_4059 0.68 -0.2
304,037 + Ac3H11_4059 0.68 +0.8
304,037 + Ac3H11_4059 0.68 +1.3
304,038 - Ac3H11_4059 0.68 +0.5
304,038 - Ac3H11_4059 0.68 +0.6
304,038 - Ac3H11_4059 0.68 +0.7
304,041 + Ac3H11_4059 0.68 -0.7
304,041 + Ac3H11_4059 0.68 +0.8
304,041 + Ac3H11_4059 0.68 +0.7
304,041 + Ac3H11_4059 0.68 +1.4
304,041 + Ac3H11_4059 0.68 -0.5
304,041 + Ac3H11_4059 0.68 -0.0
304,041 + Ac3H11_4059 0.68 +0.8
304,041 + Ac3H11_4059 0.68 +1.2
304,041 + Ac3H11_4059 0.68 +0.4
304,041 + Ac3H11_4059 0.68 +1.1
304,041 + Ac3H11_4059 0.68 +0.6
304,041 + Ac3H11_4059 0.68 +0.5
304,041 + Ac3H11_4059 0.68 +0.9
304,041 + Ac3H11_4059 0.68 +0.9
304,041 + Ac3H11_4059 0.68 +0.6
304,042 - Ac3H11_4059 0.68 +1.0
304,042 - Ac3H11_4059 0.68 +0.7
304,042 - Ac3H11_4059 0.68 +0.8
304,042 - Ac3H11_4059 0.68 +2.5
304,042 - Ac3H11_4059 0.68 -0.5
304,042 - Ac3H11_4059 0.68 +0.7
304,042 - Ac3H11_4059 0.68 +1.5
304,042 - Ac3H11_4059 0.68 +1.0
304,042 - Ac3H11_4059 0.68 +0.8
304,042 - Ac3H11_4059 0.68 -0.0
304,042 - Ac3H11_4059 0.68 +1.7
304,042 - Ac3H11_4059 0.68 +1.2
304,042 - Ac3H11_4059 0.68 -0.1
304,102 - Ac3H11_4059 0.70 +0.9
304,102 - Ac3H11_4059 0.70 -0.7
304,182 + Ac3H11_4059 0.74 +0.5
304,182 + Ac3H11_4059 0.74 +0.2
304,183 - Ac3H11_4059 0.74 +0.6
304,183 - Ac3H11_4059 0.74 +0.9
304,854 - -0.3
304,854 - -0.0
304,886 + +0.3
304,886 + -0.1
304,886 + +1.5
304,887 - -1.5
304,887 - +1.3
304,887 - -2.6
305,064 + +1.9
305,064 + +1.6
305,064 + +1.2
305,064 + +1.5
305,065 - +0.9
305,065 - +1.0
305,065 - +1.3
305,065 - +0.8
305,065 - -0.1
305,065 - +2.8
305,065 - +1.2
305,065 - -2.4
305,065 - +0.8
305,065 - +1.6
305,081 + +1.1
305,082 - +1.1
305,082 - +2.3
305,091 + +1.5
305,092 - +1.7
305,139 + +1.4
305,139 + +0.6
305,345 + Ac3H11_4060 0.15 +0.9
305,345 + Ac3H11_4060 0.15 +1.6
305,345 + Ac3H11_4060 0.15 +1.2
305,345 + Ac3H11_4060 0.15 +1.0
305,345 + Ac3H11_4060 0.15 -0.9
305,345 + Ac3H11_4060 0.15 +1.3
305,346 - Ac3H11_4060 0.15 +1.7
305,365 - Ac3H11_4060 0.16 +1.3
305,512 - Ac3H11_4060 0.22 +1.5
305,512 - Ac3H11_4060 0.22 +1.5
305,602 + Ac3H11_4060 0.26 +1.4
305,602 + Ac3H11_4060 0.26 +1.6
305,602 + Ac3H11_4060 0.26 +1.4
305,603 - Ac3H11_4060 0.26 +1.3
305,603 - Ac3H11_4060 0.26 +0.6
305,603 - Ac3H11_4060 0.26 +1.1
305,603 - Ac3H11_4060 0.26 +0.7
305,603 - Ac3H11_4060 0.26 +1.3
305,603 - Ac3H11_4060 0.26 +0.7
305,877 + Ac3H11_4060 0.39 -0.5
305,877 + Ac3H11_4060 0.39 +1.1
305,878 - Ac3H11_4060 0.39 +1.1
305,878 - Ac3H11_4060 0.39 +1.9
305,889 + Ac3H11_4060 0.39 +1.3
306,073 - Ac3H11_4060 0.48 +0.9
306,252 + Ac3H11_4060 0.56 +1.4
306,252 + Ac3H11_4060 0.56 +0.1
306,252 + Ac3H11_4060 0.56 +1.3
306,252 + Ac3H11_4060 0.56 +1.3
306,253 - Ac3H11_4060 0.56 +1.7
306,742 - Ac3H11_4060 0.78 +0.2
306,742 - Ac3H11_4060 0.78 +1.4
306,945 + Ac3H11_4060 0.88 +1.4
306,945 + Ac3H11_4060 0.88 +0.5
306,945 + Ac3H11_4060 0.88 +1.2
306,946 - Ac3H11_4060 0.88 +1.6
306,946 - Ac3H11_4060 0.88 +0.1
306,946 - Ac3H11_4060 0.88 +0.9
306,946 - Ac3H11_4060 0.88 +1.7
306,946 - Ac3H11_4060 0.88 +1.2
306,946 - Ac3H11_4060 0.88 +1.5
306,946 - Ac3H11_4060 0.88 +0.7
306,946 - Ac3H11_4060 0.88 +1.2
307,227 - +1.7
307,227 - +0.7
307,296 + -0.9
307,297 - +1.9
307,297 - +0.3
307,315 + +1.5
307,319 + +1.5
307,319 + +1.3
307,319 + +1.1
307,319 + +1.2
307,320 - +1.4
307,320 - +1.6
307,320 - +1.2
307,603 + Ac3H11_4061 0.11 +1.3
307,603 + Ac3H11_4061 0.11 +1.7
307,603 + Ac3H11_4061 0.11 +1.7
307,604 - Ac3H11_4061 0.11 +1.4
307,621 + Ac3H11_4061 0.12 +1.0
307,621 + Ac3H11_4061 0.12 +1.1
307,622 - Ac3H11_4061 0.12 +1.2
307,657 + Ac3H11_4061 0.13 +1.6
307,658 - Ac3H11_4061 0.13 +1.2
308,116 + Ac3H11_4061 0.31 +1.8
308,116 + Ac3H11_4061 0.31 +0.9
308,116 + Ac3H11_4061 0.31 +1.3
308,117 - Ac3H11_4061 0.31 +1.7
308,117 - Ac3H11_4061 0.31 +0.9
308,117 - Ac3H11_4061 0.31 +1.6

Or see this region's nucleotide sequence