Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3386

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3384 and Ac3H11_3385 overlap by 4 nucleotidesAc3H11_3385 and Ac3H11_3386 are separated by 45 nucleotidesAc3H11_3386 and Ac3H11_3387 are separated by 67 nucleotidesAc3H11_3387 and Ac3H11_3388 overlap by 15 nucleotides Ac3H11_3384 - Probable transmembrane protein, at 65,012 to 66,316 _3384 Ac3H11_3385 - hypothetical protein, at 66,313 to 66,453 _3385 Ac3H11_3386 - PROBABLE TRANSMEMBRANE PROTEIN, at 66,499 to 67,395 _3386 Ac3H11_3387 - Glutathione peroxidase family protein, at 67,463 to 67,954 _3387 Ac3H11_3388 - GCN5-related N-acetyltransferase, at 67,940 to 68,422 _3388 Position (kb) 66 67 68Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 66.455 kb on + strandat 66.455 kb on + strandat 66.466 kb on - strandat 66.466 kb on - strandat 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.622 kb on + strand, within Ac3H11_3386at 66.623 kb on - strand, within Ac3H11_3386at 66.623 kb on - strand, within Ac3H11_3386at 66.623 kb on - strand, within Ac3H11_3386at 66.623 kb on - strand, within Ac3H11_3386at 66.623 kb on - strand, within Ac3H11_3386at 66.788 kb on - strand, within Ac3H11_3386at 66.788 kb on - strand, within Ac3H11_3386at 66.896 kb on + strand, within Ac3H11_3386at 66.896 kb on + strand, within Ac3H11_3386at 66.897 kb on - strand, within Ac3H11_3386at 66.897 kb on - strand, within Ac3H11_3386at 67.428 kb on + strandat 67.428 kb on + strandat 67.456 kb on + strandat 67.478 kb on + strandat 67.478 kb on + strandat 67.478 kb on + strandat 67.478 kb on + strandat 67.478 kb on + strandat 67.479 kb on - strandat 67.479 kb on - strandat 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.542 kb on + strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.543 kb on - strand, within Ac3H11_3387at 67.619 kb on + strand, within Ac3H11_3387at 67.721 kb on + strand, within Ac3H11_3387at 67.722 kb on - strand, within Ac3H11_3387at 67.722 kb on - strand, within Ac3H11_3387at 67.784 kb on + strand, within Ac3H11_3387at 67.785 kb on - strand, within Ac3H11_3387at 67.785 kb on - strand, within Ac3H11_3387at 67.785 kb on - strand, within Ac3H11_3387at 67.890 kb on - strand, within Ac3H11_3387at 67.927 kb on + strandat 67.927 kb on + strandat 68.040 kb on + strand, within Ac3H11_3388at 68.041 kb on - strand, within Ac3H11_3388at 68.041 kb on - strand, within Ac3H11_3388

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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66,455 + -0.1
66,455 + -4.3
66,466 - -0.9
66,466 - +1.3
66,622 + Ac3H11_3386 0.14 -2.7
66,622 + Ac3H11_3386 0.14 +0.5
66,622 + Ac3H11_3386 0.14 -2.3
66,622 + Ac3H11_3386 0.14 +1.0
66,622 + Ac3H11_3386 0.14 +0.1
66,622 + Ac3H11_3386 0.14 +1.6
66,622 + Ac3H11_3386 0.14 +0.2
66,622 + Ac3H11_3386 0.14 +0.5
66,623 - Ac3H11_3386 0.14 -1.5
66,623 - Ac3H11_3386 0.14 -0.6
66,623 - Ac3H11_3386 0.14 -0.6
66,623 - Ac3H11_3386 0.14 +0.5
66,623 - Ac3H11_3386 0.14 +0.3
66,788 - Ac3H11_3386 0.32 +0.3
66,788 - Ac3H11_3386 0.32 +0.5
66,896 + Ac3H11_3386 0.44 -0.6
66,896 + Ac3H11_3386 0.44 +0.4
66,897 - Ac3H11_3386 0.44 +1.7
66,897 - Ac3H11_3386 0.44 +0.8
67,428 + -0.7
67,428 + +0.4
67,456 + -2.0
67,478 + -0.9
67,478 + -3.1
67,478 + -1.3
67,478 + -2.3
67,478 + -1.6
67,479 - -0.9
67,479 - +3.1
67,542 + Ac3H11_3387 0.16 +1.7
67,542 + Ac3H11_3387 0.16 +0.3
67,542 + Ac3H11_3387 0.16 -0.3
67,542 + Ac3H11_3387 0.16 +1.3
67,542 + Ac3H11_3387 0.16 -1.0
67,542 + Ac3H11_3387 0.16 -2.0
67,542 + Ac3H11_3387 0.16 -1.1
67,542 + Ac3H11_3387 0.16 -0.4
67,542 + Ac3H11_3387 0.16 +0.4
67,543 - Ac3H11_3387 0.16 +0.7
67,543 - Ac3H11_3387 0.16 -0.2
67,543 - Ac3H11_3387 0.16 +1.3
67,543 - Ac3H11_3387 0.16 +0.2
67,543 - Ac3H11_3387 0.16 +0.1
67,543 - Ac3H11_3387 0.16 -1.0
67,543 - Ac3H11_3387 0.16 +0.5
67,543 - Ac3H11_3387 0.16 -2.0
67,619 + Ac3H11_3387 0.32 -0.2
67,721 + Ac3H11_3387 0.52 -0.3
67,722 - Ac3H11_3387 0.53 -1.9
67,722 - Ac3H11_3387 0.53 +1.4
67,784 + Ac3H11_3387 0.65 -0.0
67,785 - Ac3H11_3387 0.65 +1.5
67,785 - Ac3H11_3387 0.65 -0.4
67,785 - Ac3H11_3387 0.65 -0.4
67,890 - Ac3H11_3387 0.87 +1.1
67,927 + +0.1
67,927 + -0.4
68,040 + Ac3H11_3388 0.21 +0.7
68,041 - Ac3H11_3388 0.21 +1.8
68,041 - Ac3H11_3388 0.21 +0.3

Or see this region's nucleotide sequence