Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1835

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1834 and Ac3H11_1835 are separated by 114 nucleotidesAc3H11_1835 and Ac3H11_1836 are separated by 186 nucleotidesAc3H11_1836 and Ac3H11_1837 are separated by 36 nucleotides Ac3H11_1834 - Soluble lytic murein transglycosylase precursor (EC 3.2.1.-), at 33,806 to 35,833 _1834 Ac3H11_1835 - hypothetical protein, at 35,948 to 36,529 _1835 Ac3H11_1836 - hypothetical protein, at 36,716 to 37,102 _1836 Ac3H11_1837 - Beta-lactamase-like, at 37,139 to 38,083 _1837 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 34.980 kb on - strand, within Ac3H11_1834at 34.980 kb on - strand, within Ac3H11_1834at 35.100 kb on - strand, within Ac3H11_1834at 35.147 kb on + strand, within Ac3H11_1834at 35.147 kb on + strand, within Ac3H11_1834at 35.354 kb on + strand, within Ac3H11_1834at 35.354 kb on + strand, within Ac3H11_1834at 35.354 kb on + strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.355 kb on - strand, within Ac3H11_1834at 35.361 kb on - strand, within Ac3H11_1834at 35.476 kb on + strand, within Ac3H11_1834at 35.477 kb on - strand, within Ac3H11_1834at 35.540 kb on + strand, within Ac3H11_1834at 35.597 kb on + strand, within Ac3H11_1834at 35.598 kb on - strand, within Ac3H11_1834at 35.696 kb on + strandat 35.696 kb on + strandat 35.729 kb on + strandat 36.026 kb on + strand, within Ac3H11_1835at 36.027 kb on - strand, within Ac3H11_1835at 36.027 kb on - strand, within Ac3H11_1835at 36.059 kb on + strand, within Ac3H11_1835at 36.060 kb on - strand, within Ac3H11_1835at 36.060 kb on - strand, within Ac3H11_1835at 36.173 kb on + strand, within Ac3H11_1835at 36.173 kb on + strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.174 kb on - strand, within Ac3H11_1835at 36.256 kb on + strand, within Ac3H11_1835at 36.356 kb on + strand, within Ac3H11_1835at 36.356 kb on + strand, within Ac3H11_1835at 36.357 kb on - strand, within Ac3H11_1835at 36.416 kb on + strand, within Ac3H11_1835at 36.416 kb on + strandat 36.417 kb on - strand, within Ac3H11_1835at 36.417 kb on - strand, within Ac3H11_1835at 36.417 kb on - strand, within Ac3H11_1835at 36.464 kb on + strand, within Ac3H11_1835at 36.464 kb on + strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.465 kb on - strand, within Ac3H11_1835at 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.515 kb on + strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.516 kb on - strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.527 kb on + strandat 36.528 kb on - strandat 36.528 kb on - strandat 36.995 kb on + strand, within Ac3H11_1836at 36.995 kb on + strand, within Ac3H11_1836at 36.995 kb on + strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 36.996 kb on - strand, within Ac3H11_1836at 37.100 kb on + strandat 37.100 kb on + strandat 37.100 kb on + strandat 37.100 kb on + strandat 37.100 kb on + strandat 37.101 kb on - strandat 37.267 kb on - strand, within Ac3H11_1837at 37.267 kb on - strand, within Ac3H11_1837at 37.267 kb on - strand, within Ac3H11_1837at 37.333 kb on - strand, within Ac3H11_1837at 37.333 kb on - strand, within Ac3H11_1837at 37.356 kb on + strand, within Ac3H11_1837at 37.357 kb on - strand, within Ac3H11_1837

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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34,980 - Ac3H11_1834 0.58 -1.5
34,980 - Ac3H11_1834 0.58 -0.5
35,100 - Ac3H11_1834 0.64 -0.3
35,147 + Ac3H11_1834 0.66 -0.3
35,147 + Ac3H11_1834 0.66 +1.6
35,354 + Ac3H11_1834 0.76 -0.7
35,354 + Ac3H11_1834 0.76 +0.5
35,354 + Ac3H11_1834 0.76 +1.9
35,355 - Ac3H11_1834 0.76 -0.1
35,355 - Ac3H11_1834 0.76 -0.2
35,355 - Ac3H11_1834 0.76 -1.3
35,355 - Ac3H11_1834 0.76 +0.2
35,355 - Ac3H11_1834 0.76 -1.1
35,355 - Ac3H11_1834 0.76 +0.2
35,361 - Ac3H11_1834 0.77 -1.0
35,476 + Ac3H11_1834 0.82 -0.1
35,477 - Ac3H11_1834 0.82 -2.0
35,540 + Ac3H11_1834 0.86 +0.6
35,597 + Ac3H11_1834 0.88 +2.9
35,598 - Ac3H11_1834 0.88 -0.9
35,696 + +1.6
35,696 + +1.3
35,729 + -2.8
36,026 + Ac3H11_1835 0.13 -1.7
36,027 - Ac3H11_1835 0.14 -0.1
36,027 - Ac3H11_1835 0.14 -1.8
36,059 + Ac3H11_1835 0.19 +1.6
36,060 - Ac3H11_1835 0.19 -1.9
36,060 - Ac3H11_1835 0.19 +1.2
36,173 + Ac3H11_1835 0.39 -2.8
36,173 + Ac3H11_1835 0.39 +0.8
36,174 - Ac3H11_1835 0.39 -1.1
36,174 - Ac3H11_1835 0.39 -0.9
36,174 - Ac3H11_1835 0.39 +1.1
36,174 - Ac3H11_1835 0.39 -2.3
36,174 - Ac3H11_1835 0.39 +1.2
36,174 - Ac3H11_1835 0.39 -0.1
36,256 + Ac3H11_1835 0.53 +0.4
36,356 + Ac3H11_1835 0.70 +0.6
36,356 + Ac3H11_1835 0.70 -0.3
36,357 - Ac3H11_1835 0.70 +0.8
36,416 + Ac3H11_1835 0.80 -0.8
36,416 + +1.6
36,417 - Ac3H11_1835 0.81 -0.4
36,417 - Ac3H11_1835 0.81 +0.9
36,417 - Ac3H11_1835 0.81 +0.3
36,464 + Ac3H11_1835 0.89 +0.6
36,464 + Ac3H11_1835 0.89 -0.4
36,465 - Ac3H11_1835 0.89 -0.3
36,465 - Ac3H11_1835 0.89 +0.1
36,465 - Ac3H11_1835 0.89 -0.1
36,515 + -0.9
36,515 + -0.6
36,515 + +1.3
36,515 + -1.7
36,515 + +2.1
36,515 + +1.8
36,515 + -1.7
36,515 + -0.6
36,516 - -0.3
36,516 - +0.2
36,516 - +0.8
36,516 - +0.7
36,516 - -0.2
36,516 - +0.0
36,516 - -0.9
36,527 + -1.0
36,527 + -0.2
36,527 + +0.2
36,527 + -0.8
36,527 + -1.3
36,528 - +1.2
36,528 - +0.0
36,995 + Ac3H11_1836 0.72 -1.3
36,995 + Ac3H11_1836 0.72 +0.1
36,995 + Ac3H11_1836 0.72 -1.3
36,996 - Ac3H11_1836 0.72 -0.7
36,996 - Ac3H11_1836 0.72 -1.8
36,996 - Ac3H11_1836 0.72 +0.8
36,996 - Ac3H11_1836 0.72 +0.2
36,996 - Ac3H11_1836 0.72 -0.6
37,100 + -1.2
37,100 + +0.0
37,100 + -0.4
37,100 + -1.0
37,100 + -0.3
37,101 - +0.7
37,267 - Ac3H11_1837 0.14 +2.6
37,267 - Ac3H11_1837 0.14 -1.0
37,267 - Ac3H11_1837 0.14 -0.8
37,333 - Ac3H11_1837 0.21 +0.0
37,333 - Ac3H11_1837 0.21 -2.1
37,356 + Ac3H11_1837 0.23 -0.1
37,357 - Ac3H11_1837 0.23 +1.4

Or see this region's nucleotide sequence