Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1816

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1814 and Ac3H11_1815 overlap by 17 nucleotidesAc3H11_1815 and Ac3H11_1816 are separated by 28 nucleotidesAc3H11_1816 and Ac3H11_1817 are separated by 55 nucleotides Ac3H11_1814 - low-specificity D-threonine aldolase, at 19,791 to 20,960 _1814 Ac3H11_1815 - Phosphoglycerate mutase (EC 5.4.2.1), at 20,944 to 21,585 _1815 Ac3H11_1816 - Probable lipoprotein transmembrane, at 21,614 to 22,228 _1816 Ac3H11_1817 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 22,284 to 23,225 _1817 Position (kb) 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.108 kb on - strand, within Ac3H11_1815at 21.239 kb on + strand, within Ac3H11_1815at 21.239 kb on + strand, within Ac3H11_1815at 21.239 kb on + strand, within Ac3H11_1815at 21.240 kb on - strand, within Ac3H11_1815at 21.240 kb on - strand, within Ac3H11_1815at 21.240 kb on - strand, within Ac3H11_1815at 21.425 kb on + strand, within Ac3H11_1815at 21.425 kb on + strand, within Ac3H11_1815at 21.425 kb on + strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.426 kb on - strand, within Ac3H11_1815at 21.708 kb on + strand, within Ac3H11_1816at 21.708 kb on + strand, within Ac3H11_1816at 21.708 kb on + strand, within Ac3H11_1816at 21.708 kb on + strand, within Ac3H11_1816at 21.708 kb on + strand, within Ac3H11_1816at 21.708 kb on + strand, within Ac3H11_1816at 21.709 kb on - strand, within Ac3H11_1816at 21.759 kb on + strand, within Ac3H11_1816at 21.760 kb on - strand, within Ac3H11_1816at 21.760 kb on - strand, within Ac3H11_1816at 21.903 kb on + strand, within Ac3H11_1816at 21.903 kb on + strandat 21.903 kb on + strand, within Ac3H11_1816at 21.904 kb on - strand, within Ac3H11_1816at 21.912 kb on + strand, within Ac3H11_1816at 21.930 kb on + strand, within Ac3H11_1816at 21.930 kb on + strand, within Ac3H11_1816at 21.931 kb on - strand, within Ac3H11_1816at 21.931 kb on - strand, within Ac3H11_1816at 22.086 kb on + strand, within Ac3H11_1816at 22.086 kb on + strand, within Ac3H11_1816at 22.087 kb on - strand, within Ac3H11_1816at 22.408 kb on + strand, within Ac3H11_1817at 22.408 kb on + strand, within Ac3H11_1817at 22.408 kb on + strand, within Ac3H11_1817at 22.409 kb on - strand, within Ac3H11_1817at 22.618 kb on + strand, within Ac3H11_1817at 22.618 kb on + strand, within Ac3H11_1817at 22.619 kb on - strand, within Ac3H11_1817at 22.787 kb on - strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.864 kb on + strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.865 kb on - strand, within Ac3H11_1817at 22.912 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.029 kb on + strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.030 kb on - strand, within Ac3H11_1817at 23.219 kb on + strandat 23.219 kb on + strandat 23.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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21,108 - Ac3H11_1815 0.26 -3.0
21,239 + Ac3H11_1815 0.46 +1.3
21,239 + Ac3H11_1815 0.46 -0.8
21,239 + Ac3H11_1815 0.46 +1.0
21,240 - Ac3H11_1815 0.46 -0.8
21,240 - Ac3H11_1815 0.46 -1.0
21,240 - Ac3H11_1815 0.46 -0.1
21,425 + Ac3H11_1815 0.75 -2.5
21,425 + Ac3H11_1815 0.75 -0.7
21,425 + Ac3H11_1815 0.75 +0.2
21,426 - Ac3H11_1815 0.75 -3.0
21,426 - Ac3H11_1815 0.75 +0.5
21,426 - Ac3H11_1815 0.75 +0.2
21,426 - Ac3H11_1815 0.75 +0.2
21,426 - Ac3H11_1815 0.75 -0.5
21,426 - Ac3H11_1815 0.75 -1.0
21,426 - Ac3H11_1815 0.75 -0.2
21,426 - Ac3H11_1815 0.75 +0.6
21,426 - Ac3H11_1815 0.75 -0.8
21,426 - Ac3H11_1815 0.75 +3.5
21,426 - Ac3H11_1815 0.75 +0.0
21,426 - Ac3H11_1815 0.75 -1.4
21,708 + Ac3H11_1816 0.15 -2.7
21,708 + Ac3H11_1816 0.15 +1.2
21,708 + Ac3H11_1816 0.15 +0.6
21,708 + Ac3H11_1816 0.15 +0.2
21,708 + Ac3H11_1816 0.15 +0.3
21,708 + Ac3H11_1816 0.15 -3.4
21,709 - Ac3H11_1816 0.15 -0.7
21,759 + Ac3H11_1816 0.24 +0.8
21,760 - Ac3H11_1816 0.24 -0.7
21,760 - Ac3H11_1816 0.24 -2.5
21,903 + Ac3H11_1816 0.47 -2.5
21,903 + +3.1
21,903 + Ac3H11_1816 0.47 +1.7
21,904 - Ac3H11_1816 0.47 -1.7
21,912 + Ac3H11_1816 0.48 +0.9
21,930 + Ac3H11_1816 0.51 -1.7
21,930 + Ac3H11_1816 0.51 -0.0
21,931 - Ac3H11_1816 0.52 +0.7
21,931 - Ac3H11_1816 0.52 +0.1
22,086 + Ac3H11_1816 0.77 -1.6
22,086 + Ac3H11_1816 0.77 +0.6
22,087 - Ac3H11_1816 0.77 -1.8
22,408 + Ac3H11_1817 0.13 +0.9
22,408 + Ac3H11_1817 0.13 -0.1
22,408 + Ac3H11_1817 0.13 -0.6
22,409 - Ac3H11_1817 0.13 -0.0
22,618 + Ac3H11_1817 0.35 +0.4
22,618 + Ac3H11_1817 0.35 +0.7
22,619 - Ac3H11_1817 0.36 +0.7
22,787 - Ac3H11_1817 0.53 -0.4
22,864 + Ac3H11_1817 0.62 +0.3
22,864 + Ac3H11_1817 0.62 -0.3
22,864 + Ac3H11_1817 0.62 -0.0
22,864 + Ac3H11_1817 0.62 +0.5
22,864 + Ac3H11_1817 0.62 +3.0
22,864 + Ac3H11_1817 0.62 +0.6
22,864 + Ac3H11_1817 0.62 +0.2
22,864 + Ac3H11_1817 0.62 -2.4
22,864 + Ac3H11_1817 0.62 +1.6
22,864 + Ac3H11_1817 0.62 +0.6
22,864 + Ac3H11_1817 0.62 -0.6
22,864 + Ac3H11_1817 0.62 -0.4
22,864 + Ac3H11_1817 0.62 +0.3
22,865 - Ac3H11_1817 0.62 +0.1
22,865 - Ac3H11_1817 0.62 +1.6
22,865 - Ac3H11_1817 0.62 +1.8
22,865 - Ac3H11_1817 0.62 +2.4
22,865 - Ac3H11_1817 0.62 -0.3
22,865 - Ac3H11_1817 0.62 +0.3
22,865 - Ac3H11_1817 0.62 +0.5
22,865 - Ac3H11_1817 0.62 +0.5
22,865 - Ac3H11_1817 0.62 +0.8
22,865 - Ac3H11_1817 0.62 +0.6
22,912 + Ac3H11_1817 0.67 +0.2
23,029 + Ac3H11_1817 0.79 +0.6
23,029 + Ac3H11_1817 0.79 -0.8
23,029 + Ac3H11_1817 0.79 +1.6
23,029 + Ac3H11_1817 0.79 +0.6
23,029 + Ac3H11_1817 0.79 +1.6
23,029 + Ac3H11_1817 0.79 +0.6
23,029 + Ac3H11_1817 0.79 +2.7
23,029 + Ac3H11_1817 0.79 -0.6
23,029 + Ac3H11_1817 0.79 +0.2
23,029 + Ac3H11_1817 0.79 +0.7
23,029 + Ac3H11_1817 0.79 +0.1
23,030 - Ac3H11_1817 0.79 -0.2
23,030 - Ac3H11_1817 0.79 -0.0
23,030 - Ac3H11_1817 0.79 +0.1
23,030 - Ac3H11_1817 0.79 +0.4
23,030 - Ac3H11_1817 0.79 +2.3
23,030 - Ac3H11_1817 0.79 +2.0
23,030 - Ac3H11_1817 0.79 +1.6
23,219 + +0.7
23,219 + +0.2
23,220 - -0.0

Or see this region's nucleotide sequence