Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1233

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1232 and Ac3H11_1233 are separated by 181 nucleotidesAc3H11_1233 and Ac3H11_1234 are separated by 127 nucleotidesAc3H11_1234 and Ac3H11_1235 are separated by 54 nucleotides Ac3H11_1232 - Adenylosuccinate lyase (EC 4.3.2.2), at 49,549 to 50,967 _1232 Ac3H11_1233 - YaeQ protein, at 51,149 to 51,709 _1233 Ac3H11_1234 - FIG00932085: hypothetical protein, at 51,837 to 52,142 _1234 Ac3H11_1235 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 52,197 to 52,631 _1235 Position (kb) 51 52Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 51.065 kb on + strandat 51.066 kb on - strandat 51.066 kb on - strandat 51.066 kb on - strandat 51.087 kb on - strandat 51.087 kb on - strandat 51.087 kb on - strandat 51.126 kb on + strandat 51.130 kb on + strandat 51.131 kb on - strandat 51.137 kb on + strandat 51.138 kb on - strandat 51.209 kb on + strand, within Ac3H11_1233at 51.209 kb on + strand, within Ac3H11_1233at 51.210 kb on - strand, within Ac3H11_1233at 51.212 kb on + strand, within Ac3H11_1233at 51.212 kb on + strand, within Ac3H11_1233at 51.212 kb on + strand, within Ac3H11_1233at 51.213 kb on - strand, within Ac3H11_1233at 51.213 kb on - strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.274 kb on + strand, within Ac3H11_1233at 51.275 kb on - strand, within Ac3H11_1233at 51.275 kb on - strand, within Ac3H11_1233at 51.488 kb on + strand, within Ac3H11_1233at 51.707 kb on + strandat 51.707 kb on + strandat 51.708 kb on - strandat 51.779 kb on + strandat 51.833 kb on - strandat 51.833 kb on - strandat 51.982 kb on + strand, within Ac3H11_1234at 51.982 kb on + strand, within Ac3H11_1234at 52.045 kb on + strand, within Ac3H11_1234at 52.153 kb on + strandat 52.153 kb on + strandat 52.154 kb on - strandat 52.174 kb on + strandat 52.174 kb on + strandat 52.175 kb on - strandat 52.175 kb on - strandat 52.249 kb on + strand, within Ac3H11_1235at 52.250 kb on - strand, within Ac3H11_1235at 52.432 kb on + strand, within Ac3H11_1235at 52.432 kb on + strand, within Ac3H11_1235at 52.432 kb on + strand, within Ac3H11_1235at 52.433 kb on - strand, within Ac3H11_1235at 52.433 kb on - strand, within Ac3H11_1235at 52.501 kb on + strand, within Ac3H11_1235at 52.501 kb on + strand, within Ac3H11_1235at 52.501 kb on + strand, within Ac3H11_1235at 52.501 kb on + strand, within Ac3H11_1235at 52.501 kb on + strand, within Ac3H11_1235at 52.502 kb on - strand, within Ac3H11_1235at 52.502 kb on - strand, within Ac3H11_1235at 52.516 kb on + strand, within Ac3H11_1235at 52.516 kb on + strand, within Ac3H11_1235at 52.516 kb on + strand, within Ac3H11_1235at 52.516 kb on + strand, within Ac3H11_1235at 52.517 kb on - strand, within Ac3H11_1235at 52.517 kb on - strand, within Ac3H11_1235at 52.662 kb on + strandat 52.662 kb on + strandat 52.663 kb on - strandat 52.663 kb on - strandat 52.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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51,065 + -2.0
51,066 - +0.2
51,066 - +0.2
51,066 - -1.5
51,087 - -1.9
51,087 - -1.2
51,087 - -1.0
51,126 + +0.8
51,130 + -1.2
51,131 - -0.8
51,137 + +0.4
51,138 - -2.3
51,209 + Ac3H11_1233 0.11 -1.6
51,209 + Ac3H11_1233 0.11 -0.3
51,210 - Ac3H11_1233 0.11 -1.2
51,212 + Ac3H11_1233 0.11 +1.7
51,212 + Ac3H11_1233 0.11 +1.2
51,212 + Ac3H11_1233 0.11 -0.3
51,213 - Ac3H11_1233 0.11 -0.7
51,213 - Ac3H11_1233 0.11 +0.9
51,274 + Ac3H11_1233 0.22 -0.7
51,274 + Ac3H11_1233 0.22 -1.0
51,274 + Ac3H11_1233 0.22 -0.7
51,274 + Ac3H11_1233 0.22 +0.9
51,275 - Ac3H11_1233 0.22 +1.7
51,275 - Ac3H11_1233 0.22 -2.6
51,488 + Ac3H11_1233 0.60 -0.6
51,707 + +2.1
51,707 + +0.0
51,708 - +0.4
51,779 + +0.2
51,833 - -1.5
51,833 - -2.0
51,982 + Ac3H11_1234 0.47 +0.8
51,982 + Ac3H11_1234 0.47 -0.1
52,045 + Ac3H11_1234 0.68 +0.2
52,153 + +0.6
52,153 + -0.9
52,154 - -1.2
52,174 + -0.3
52,174 + -0.2
52,175 - +0.8
52,175 - -0.1
52,249 + Ac3H11_1235 0.12 -0.7
52,250 - Ac3H11_1235 0.12 -0.5
52,432 + Ac3H11_1235 0.54 -1.6
52,432 + Ac3H11_1235 0.54 -0.9
52,432 + Ac3H11_1235 0.54 -0.7
52,433 - Ac3H11_1235 0.54 -3.0
52,433 - Ac3H11_1235 0.54 -0.5
52,501 + Ac3H11_1235 0.70 -0.6
52,501 + Ac3H11_1235 0.70 +0.2
52,501 + Ac3H11_1235 0.70 -0.2
52,501 + Ac3H11_1235 0.70 -3.1
52,501 + Ac3H11_1235 0.70 +0.1
52,502 - Ac3H11_1235 0.70 -2.9
52,502 - Ac3H11_1235 0.70 -0.0
52,516 + Ac3H11_1235 0.73 +0.0
52,516 + Ac3H11_1235 0.73 -0.4
52,516 + Ac3H11_1235 0.73 +3.3
52,516 + Ac3H11_1235 0.73 -0.3
52,517 - Ac3H11_1235 0.74 +0.3
52,517 - Ac3H11_1235 0.74 -0.7
52,662 + +0.7
52,662 + +0.6
52,663 - +0.4
52,663 - -1.7
52,663 - -0.2

Or see this region's nucleotide sequence