Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_101 and Ac3H11_102 are separated by 34 nucleotides Ac3H11_102 and Ac3H11_103 are separated by 1 nucleotides Ac3H11_103 and Ac3H11_104 overlap by 1 nucleotides Ac3H11_104 and Ac3H11_105 overlap by 1 nucleotides
Ac3H11_101 - Benzoate transport, extracellular ligand-binding receptor, at 104,825 to 105,994
_101
Ac3H11_102 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 106,029 to 106,910
_102
Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961
_103
Ac3H11_104 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 107,961 to 108,710
_104
Ac3H11_105 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 108,710 to 109,414
_105
Position (kb)
106
107
108 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 106.029 kb on - strand at 106.048 kb on + strand at 106.049 kb on - strand at 106.167 kb on + strand, within Ac3H11_102 at 106.167 kb on + strand, within Ac3H11_102 at 106.174 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.182 kb on + strand, within Ac3H11_102 at 106.183 kb on - strand, within Ac3H11_102 at 106.183 kb on - strand, within Ac3H11_102 at 106.458 kb on + strand, within Ac3H11_102 at 106.557 kb on + strand, within Ac3H11_102 at 106.557 kb on + strand, within Ac3H11_102 at 106.606 kb on - strand, within Ac3H11_102 at 106.671 kb on + strand, within Ac3H11_102 at 106.672 kb on - strand, within Ac3H11_102 at 106.809 kb on + strand, within Ac3H11_102 at 106.810 kb on - strand, within Ac3H11_102 at 106.810 kb on - strand, within Ac3H11_102 at 107.077 kb on + strand, within Ac3H11_103 at 107.197 kb on + strand, within Ac3H11_103 at 107.197 kb on + strand, within Ac3H11_103 at 107.197 kb on + strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.198 kb on - strand, within Ac3H11_103 at 107.323 kb on + strand, within Ac3H11_103 at 107.324 kb on - strand, within Ac3H11_103 at 107.374 kb on + strand, within Ac3H11_103 at 107.375 kb on - strand, within Ac3H11_103 at 107.518 kb on + strand, within Ac3H11_103 at 107.608 kb on + strand, within Ac3H11_103 at 107.609 kb on - strand, within Ac3H11_103 at 107.763 kb on + strand, within Ac3H11_103 at 107.764 kb on - strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.776 kb on + strand, within Ac3H11_103 at 107.927 kb on + strand at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.121 kb on + strand, within Ac3H11_104 at 108.122 kb on - strand, within Ac3H11_104 at 108.122 kb on - strand, within Ac3H11_104 at 108.372 kb on - strand, within Ac3H11_104 at 108.372 kb on - strand, within Ac3H11_104 at 108.691 kb on - strand at 108.768 kb on + strand at 108.768 kb on + strand at 108.769 kb on - strand at 108.827 kb on - strand, within Ac3H11_105 at 108.904 kb on + strand, within Ac3H11_105 at 108.904 kb on + strand, within Ac3H11_105 at 108.905 kb on - strand, within Ac3H11_105 at 108.905 kb on - strand, within Ac3H11_105
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 106,029 - +1.0 106,048 + +0.8 106,049 - -0.5 106,167 + Ac3H11_102 0.16 -0.3 106,167 + Ac3H11_102 0.16 -0.7 106,174 + Ac3H11_102 0.16 +0.7 106,182 + Ac3H11_102 0.17 +0.1 106,182 + Ac3H11_102 0.17 -0.1 106,182 + Ac3H11_102 0.17 +0.3 106,182 + Ac3H11_102 0.17 -3.1 106,183 - Ac3H11_102 0.17 -1.4 106,183 - Ac3H11_102 0.17 -0.6 106,458 + Ac3H11_102 0.49 +0.0 106,557 + Ac3H11_102 0.60 -2.5 106,557 + Ac3H11_102 0.60 +0.0 106,606 - Ac3H11_102 0.65 -0.9 106,671 + Ac3H11_102 0.73 -0.6 106,672 - Ac3H11_102 0.73 +1.3 106,809 + Ac3H11_102 0.88 -0.8 106,810 - Ac3H11_102 0.89 +0.3 106,810 - Ac3H11_102 0.89 -0.2 107,077 + Ac3H11_103 0.16 -0.9 107,197 + Ac3H11_103 0.27 -0.5 107,197 + Ac3H11_103 0.27 +0.2 107,197 + Ac3H11_103 0.27 -0.9 107,198 - Ac3H11_103 0.27 -1.5 107,198 - Ac3H11_103 0.27 -1.1 107,198 - Ac3H11_103 0.27 -0.3 107,198 - Ac3H11_103 0.27 -0.5 107,323 + Ac3H11_103 0.39 -0.1 107,324 - Ac3H11_103 0.39 -1.2 107,374 + Ac3H11_103 0.44 -0.0 107,375 - Ac3H11_103 0.44 +1.2 107,518 + Ac3H11_103 0.58 -0.4 107,608 + Ac3H11_103 0.66 -0.9 107,609 - Ac3H11_103 0.66 +0.9 107,763 + Ac3H11_103 0.81 -1.0 107,764 - Ac3H11_103 0.81 +0.2 107,776 + Ac3H11_103 0.82 +1.2 107,776 + Ac3H11_103 0.82 +0.4 107,927 + -0.5 108,121 + Ac3H11_104 0.21 -1.7 108,121 + Ac3H11_104 0.21 -1.4 108,121 + Ac3H11_104 0.21 -1.8 108,121 + Ac3H11_104 0.21 -1.0 108,121 + Ac3H11_104 0.21 -2.5 108,122 - Ac3H11_104 0.21 -0.2 108,122 - Ac3H11_104 0.21 +1.5 108,372 - Ac3H11_104 0.55 +1.9 108,372 - Ac3H11_104 0.55 -1.1 108,691 - +0.3 108,768 + +0.1 108,768 + +1.2 108,769 - +0.5 108,827 - Ac3H11_105 0.17 -0.7 108,904 + Ac3H11_105 0.28 -0.2 108,904 + Ac3H11_105 0.28 +0.8 108,905 - Ac3H11_105 0.28 +1.1 108,905 - Ac3H11_105 0.28 -0.3
Or see this region's nucleotide sequence