Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_101

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_99 and Ac3H11_100 are separated by 60 nucleotidesAc3H11_100 and Ac3H11_101 are separated by 68 nucleotidesAc3H11_101 and Ac3H11_102 are separated by 34 nucleotidesAc3H11_102 and Ac3H11_103 are separated by 1 nucleotides Ac3H11_99 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 102,336 to 103,883 _99 Ac3H11_100 - Enoyl-CoA hydratase (EC 4.2.1.17), at 103,944 to 104,756 _100 Ac3H11_101 - Benzoate transport, extracellular ligand-binding receptor, at 104,825 to 105,994 _101 Ac3H11_102 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 106,029 to 106,910 _102 Ac3H11_103 - Benzoate transport, inner-membrane translocator precursor, at 106,912 to 107,961 _103 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 104.015 kb on - strandat 104.015 kb on - strandat 104.361 kb on + strand, within Ac3H11_100at 104.362 kb on - strand, within Ac3H11_100at 104.436 kb on - strand, within Ac3H11_100at 104.506 kb on + strand, within Ac3H11_100at 104.506 kb on + strand, within Ac3H11_100at 104.597 kb on + strand, within Ac3H11_100at 104.597 kb on + strand, within Ac3H11_100at 104.670 kb on + strand, within Ac3H11_100at 104.684 kb on + strandat 104.684 kb on + strandat 104.684 kb on + strandat 104.685 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.867 kb on - strandat 104.936 kb on + strandat 104.936 kb on + strandat 104.936 kb on + strandat 104.936 kb on + strandat 104.936 kb on + strandat 104.937 kb on - strandat 104.937 kb on - strandat 104.937 kb on - strandat 104.937 kb on - strandat 105.036 kb on - strand, within Ac3H11_101at 105.266 kb on - strand, within Ac3H11_101at 105.266 kb on - strand, within Ac3H11_101at 105.266 kb on - strand, within Ac3H11_101at 105.326 kb on + strand, within Ac3H11_101at 105.327 kb on - strand, within Ac3H11_101at 105.327 kb on - strand, within Ac3H11_101at 105.443 kb on + strand, within Ac3H11_101at 105.443 kb on + strand, within Ac3H11_101at 105.443 kb on + strand, within Ac3H11_101at 105.444 kb on - strand, within Ac3H11_101at 105.491 kb on + strand, within Ac3H11_101at 105.492 kb on - strand, within Ac3H11_101at 105.492 kb on - strand, within Ac3H11_101at 105.653 kb on + strand, within Ac3H11_101at 105.749 kb on + strand, within Ac3H11_101at 105.749 kb on + strand, within Ac3H11_101at 105.750 kb on - strand, within Ac3H11_101at 105.750 kb on - strand, within Ac3H11_101at 105.767 kb on + strand, within Ac3H11_101at 106.029 kb on - strandat 106.048 kb on + strandat 106.049 kb on - strandat 106.167 kb on + strand, within Ac3H11_102at 106.167 kb on + strand, within Ac3H11_102at 106.174 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.182 kb on + strand, within Ac3H11_102at 106.183 kb on - strand, within Ac3H11_102at 106.183 kb on - strand, within Ac3H11_102at 106.458 kb on + strand, within Ac3H11_102at 106.557 kb on + strand, within Ac3H11_102at 106.557 kb on + strand, within Ac3H11_102at 106.606 kb on - strand, within Ac3H11_102at 106.671 kb on + strand, within Ac3H11_102at 106.672 kb on - strand, within Ac3H11_102at 106.809 kb on + strand, within Ac3H11_102at 106.810 kb on - strand, within Ac3H11_102at 106.810 kb on - strand, within Ac3H11_102

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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104,015 - -0.6
104,015 - +0.2
104,361 + Ac3H11_100 0.51 -1.0
104,362 - Ac3H11_100 0.51 +1.8
104,436 - Ac3H11_100 0.61 +1.4
104,506 + Ac3H11_100 0.69 +0.6
104,506 + Ac3H11_100 0.69 -0.1
104,597 + Ac3H11_100 0.80 +0.9
104,597 + Ac3H11_100 0.80 -1.3
104,670 + Ac3H11_100 0.89 +0.2
104,684 + +0.0
104,684 + +1.0
104,684 + +0.3
104,685 - +0.3
104,823 - -2.8
104,823 - -0.7
104,823 - -2.2
104,867 - +0.1
104,936 + -1.1
104,936 + -0.4
104,936 + +0.4
104,936 + +1.5
104,936 + +0.1
104,937 - -0.2
104,937 - -0.4
104,937 - -1.0
104,937 - +1.2
105,036 - Ac3H11_101 0.18 -0.1
105,266 - Ac3H11_101 0.38 -0.5
105,266 - Ac3H11_101 0.38 -0.8
105,266 - Ac3H11_101 0.38 -1.1
105,326 + Ac3H11_101 0.43 +0.4
105,327 - Ac3H11_101 0.43 -0.1
105,327 - Ac3H11_101 0.43 +0.1
105,443 + Ac3H11_101 0.53 -1.8
105,443 + Ac3H11_101 0.53 -1.3
105,443 + Ac3H11_101 0.53 +0.5
105,444 - Ac3H11_101 0.53 +1.3
105,491 + Ac3H11_101 0.57 -0.7
105,492 - Ac3H11_101 0.57 -0.5
105,492 - Ac3H11_101 0.57 -0.2
105,653 + Ac3H11_101 0.71 +0.1
105,749 + Ac3H11_101 0.79 +0.5
105,749 + Ac3H11_101 0.79 +0.4
105,750 - Ac3H11_101 0.79 +1.5
105,750 - Ac3H11_101 0.79 -1.1
105,767 + Ac3H11_101 0.81 +1.6
106,029 - +1.0
106,048 + +0.8
106,049 - -0.5
106,167 + Ac3H11_102 0.16 -0.3
106,167 + Ac3H11_102 0.16 -0.7
106,174 + Ac3H11_102 0.16 +0.7
106,182 + Ac3H11_102 0.17 +0.1
106,182 + Ac3H11_102 0.17 -0.1
106,182 + Ac3H11_102 0.17 +0.3
106,182 + Ac3H11_102 0.17 -3.1
106,183 - Ac3H11_102 0.17 -1.4
106,183 - Ac3H11_102 0.17 -0.6
106,458 + Ac3H11_102 0.49 +0.0
106,557 + Ac3H11_102 0.60 -2.5
106,557 + Ac3H11_102 0.60 +0.0
106,606 - Ac3H11_102 0.65 -0.9
106,671 + Ac3H11_102 0.73 -0.6
106,672 - Ac3H11_102 0.73 +1.3
106,809 + Ac3H11_102 0.88 -0.8
106,810 - Ac3H11_102 0.89 +0.3
106,810 - Ac3H11_102 0.89 -0.2

Or see this region's nucleotide sequence