Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1001

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1000 and Ac3H11_1001 are separated by 13 nucleotidesAc3H11_1001 and Ac3H11_1002 are separated by 295 nucleotides Ac3H11_1000 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 123,464 to 124,534 _1000 Ac3H11_1001 - GGDEF/PAS/PAC-domain containing protein, at 124,548 to 125,720 _1001 Ac3H11_1002 - ABC transporter ATP-binding protein, at 126,016 to 127,086 _1002 Position (kb) 124 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 123.963 kb on + strand, within Ac3H11_1000at 123.964 kb on - strand, within Ac3H11_1000at 124.199 kb on + strand, within Ac3H11_1000at 124.824 kb on + strand, within Ac3H11_1001at 125.161 kb on + strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.162 kb on - strand, within Ac3H11_1001at 125.173 kb on + strand, within Ac3H11_1001at 125.173 kb on + strand, within Ac3H11_1001at 125.173 kb on + strand, within Ac3H11_1001at 125.174 kb on - strand, within Ac3H11_1001at 125.174 kb on - strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.344 kb on + strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.345 kb on - strand, within Ac3H11_1001at 125.389 kb on + strand, within Ac3H11_1001at 125.390 kb on - strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.404 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.500 kb on + strand, within Ac3H11_1001at 125.501 kb on - strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.503 kb on + strand, within Ac3H11_1001at 125.504 kb on - strand, within Ac3H11_1001at 125.504 kb on - strand, within Ac3H11_1001at 125.504 kb on - strand, within Ac3H11_1001at 125.793 kb on - strandat 125.807 kb on + strandat 125.807 kb on + strandat 125.808 kb on - strandat 125.808 kb on - strandat 125.809 kb on + strandat 125.810 kb on - strandat 125.810 kb on - strandat 125.967 kb on - strandat 126.079 kb on + strandat 126.079 kb on + strandat 126.079 kb on + strandat 126.080 kb on - strandat 126.136 kb on + strand, within Ac3H11_1002at 126.136 kb on + strand, within Ac3H11_1002at 126.136 kb on + strand, within Ac3H11_1002at 126.137 kb on + strand, within Ac3H11_1002at 126.137 kb on - strand, within Ac3H11_1002at 126.709 kb on + strand, within Ac3H11_1002at 126.710 kb on - strand, within Ac3H11_1002

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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123,963 + Ac3H11_1000 0.47 -0.0
123,964 - Ac3H11_1000 0.47 -1.0
124,199 + Ac3H11_1000 0.69 +1.5
124,824 + Ac3H11_1001 0.24 +0.8
125,161 + Ac3H11_1001 0.52 -1.1
125,162 - Ac3H11_1001 0.52 -1.4
125,162 - Ac3H11_1001 0.52 -1.7
125,162 - Ac3H11_1001 0.52 +1.3
125,162 - Ac3H11_1001 0.52 +1.1
125,162 - Ac3H11_1001 0.52 +0.6
125,162 - Ac3H11_1001 0.52 +0.7
125,173 + Ac3H11_1001 0.53 -0.7
125,173 + Ac3H11_1001 0.53 +1.0
125,173 + Ac3H11_1001 0.53 +1.0
125,174 - Ac3H11_1001 0.53 +1.6
125,174 - Ac3H11_1001 0.53 +1.0
125,344 + Ac3H11_1001 0.68 -0.3
125,344 + Ac3H11_1001 0.68 -2.0
125,344 + Ac3H11_1001 0.68 -2.1
125,344 + Ac3H11_1001 0.68 +1.5
125,344 + Ac3H11_1001 0.68 -0.5
125,344 + Ac3H11_1001 0.68 +0.2
125,344 + Ac3H11_1001 0.68 +1.7
125,344 + Ac3H11_1001 0.68 +0.7
125,345 - Ac3H11_1001 0.68 -0.1
125,345 - Ac3H11_1001 0.68 +1.1
125,345 - Ac3H11_1001 0.68 -2.1
125,345 - Ac3H11_1001 0.68 -1.0
125,345 - Ac3H11_1001 0.68 +0.5
125,345 - Ac3H11_1001 0.68 -0.2
125,345 - Ac3H11_1001 0.68 -1.9
125,345 - Ac3H11_1001 0.68 +1.0
125,345 - Ac3H11_1001 0.68 +1.5
125,389 + Ac3H11_1001 0.72 -0.9
125,390 - Ac3H11_1001 0.72 +0.7
125,404 + Ac3H11_1001 0.73 +0.7
125,404 + Ac3H11_1001 0.73 +0.8
125,404 + Ac3H11_1001 0.73 -0.2
125,404 + Ac3H11_1001 0.73 -2.1
125,500 + Ac3H11_1001 0.81 +1.0
125,500 + Ac3H11_1001 0.81 -0.3
125,500 + Ac3H11_1001 0.81 -1.5
125,500 + Ac3H11_1001 0.81 +0.1
125,500 + Ac3H11_1001 0.81 -1.3
125,500 + Ac3H11_1001 0.81 +1.2
125,500 + Ac3H11_1001 0.81 +1.4
125,501 - Ac3H11_1001 0.81 +0.6
125,503 + Ac3H11_1001 0.81 -0.8
125,503 + Ac3H11_1001 0.81 -0.7
125,503 + Ac3H11_1001 0.81 +0.4
125,503 + Ac3H11_1001 0.81 +0.9
125,503 + Ac3H11_1001 0.81 -1.7
125,503 + Ac3H11_1001 0.81 +0.1
125,503 + Ac3H11_1001 0.81 -1.5
125,504 - Ac3H11_1001 0.82 -0.3
125,504 - Ac3H11_1001 0.82 +0.3
125,504 - Ac3H11_1001 0.82 -0.4
125,793 - -0.7
125,807 + -0.3
125,807 + +0.1
125,808 - +3.8
125,808 - +0.3
125,809 + +1.1
125,810 - -1.2
125,810 - -0.5
125,967 - +0.7
126,079 + -2.0
126,079 + -0.7
126,079 + +0.2
126,080 - -2.1
126,136 + Ac3H11_1002 0.11 -1.3
126,136 + Ac3H11_1002 0.11 +2.4
126,136 + Ac3H11_1002 0.11 +1.7
126,137 + Ac3H11_1002 0.11 -0.6
126,137 - Ac3H11_1002 0.11 +0.1
126,709 + Ac3H11_1002 0.65 -1.6
126,710 - Ac3H11_1002 0.65 -3.3

Or see this region's nucleotide sequence